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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CAT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194476 (10 seq.)
>W131036243
ALVJ01000025
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
61919
61844
-
Met
CAT
[ENA]
¡û
>W1711666630
MRCD01000025
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
78743
78670
-
Met
CAT
[ENA]
¡û
>PL171000193
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
1709838
1709763
-
Met
CAT
[ENA]
¡û
>WENV170022586
BCQK01023138
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
451
376
-
Met
CAT
[ENA]
¢þ
>C181004957
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
4707278
4707205
-
Met
CAT
-
¡û
>C181004982
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
5526079
5526154
+
Met
CAT
-
¡û
>W1911278534
NTFS01000129
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
3127
3202
+
Met
CAT
[ENA]
¡û
>W1511501653
JXCA01000006
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
157214
157289
+
Met
CAT
[ENA]
¡û
>C131004241
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
3479926
3479851
-
Met
CAT
[Ensembl]
¡û
>C131004706
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
4789698
4789773
+
Met
CAT
[Ensembl]
¡û
Identical group No.381249 (1 seq.)
>PL171000158
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
4107
4032
-
Met
CAT
[ENA]
¡û
Identical group No.413447 (3 seq.)
>PL171000174
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
99747
99821
+
Met
CAT
[ENA]
¡û
>W1610003568
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1300
1374
+
Met
CAT
[ENA]
¡û
>W1710004188
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1300
1374
+
Met
CAT
[ENA]
¡û
Identical group No.439542 (1 seq.)
>PL171000116
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
172124
172050
-
Met
CAT
[ENA]
¡û
Identical group No.443129 (1 seq.)
>PL191000382
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3595
3521
-
Met
CAT
[ENA]
¡û
Identical group No.455209 (3 seq.)
>PL191000450
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616020
615946
-
Met
CAT
[ENA]
¡û
>PL191000518
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21380
21306
-
Met
CAT
[ENA]
¡û
>W1910646678
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24747
24673
-
Met
CAT
[ENA]
¡û
Identical group No.458618 (1 seq.)
>PL191000008
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71786
71860
+
Met
CAT
[ENA]
¡û
Identical group No.469314 (1 seq.)
>PL171000095
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21422
21496
+
Met
CAT
[ENA]
¡û
Identical group No.469315 (1 seq.)
>PL171000513
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
2855
2781
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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