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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CCA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.440211 (1 seq.)
>PL171000207
AP018299
Cyanobacteria
Fischerella sp. NIES-4106 plasmid:plasmid1
283584
283660
+
Trp
CCA
[ENA]
¡û
Identical group No.713269 (1 seq.)
>PL171000117
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
172047
171974
-
Trp
CCA
[ENA]
¡û
Identical group No.719266 (1 seq.)
>PL191000383
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3518
3445
-
Trp
CCA
[ENA]
¡û
Identical group No.756861 (1 seq.)
>PL171000196
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
10697
10770
+
Trp
CCA
[ENA]
¡û
Identical group No.761526 (1 seq.)
>PL171000096
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21499
21572
+
Trp
CCA
[ENA]
¡û
Identical group No.761528 (1 seq.)
>PL171000514
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
2778
2705
-
Trp
CCA
[ENA]
¡û
Identical group No.826327 (1 seq.)
>PL171000159
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
4030
3958
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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