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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.436985 (41 seq.)
>W1710888868
LNAA01000043
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
6115
6044
-
Gly
CCC
[ENA]
¡û
>W131036555
ALVW01000016
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
131158
131229
+
Gly
CCC
[ENA]
¡û
>W131063255
ANKO01000018
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
64731
64660
-
Gly
CCC
[ENA]
¡û
>W131065832
ANNX01000026
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
56507
56578
+
Gly
CCC
[ENA]
¡û
>W1711335742
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
241370
241441
+
Gly
CCC
[ENA]
¡û
>W1711422693
MIBH01000061
Spirochaetota
Spirochaetes bacterium RBG_13_51_14 [MIBH]
46810
46738
-
Gly
CCC
[ENA]
¡û
>W1711666715
MRCF01000014
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
11259
11330
+
Gly
CCC
[ENA]
¡û
>PL171000151
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
450135
450206
+
Gly
CCC
[ENA]
¡û
>C021121
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
23838
23767
-
Gly
CCC
[Ensembl]
¡û
>C021157
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
1622869
1622798
-
Gly
CCC
[Ensembl]
¡û
>W141091951
AUZM01000025
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
80641
80570
-
Gly
CCC
[ENA]
¡û
>WENV181412031
OGCI01072994
[OGCI] hot springs metagenome; Hot spring water
199
271
+
Gly
CCC
[ENA]
¢þ
>WENV181414943
OGCL01002436
[OGCL] hot springs metagenome; Hot spring water
769
698
-
Gly
CCC
[ENA]
¢þ
>WENV181837831
OGVL01007247
[OGVL] freshwater metagenome; freshwater
41
112
+
Gly
CCC
[ENA]
¢þ
>WENV181852719
OGWH01000998
[OGWH] freshwater metagenome; freshwater
1418
1347
-
Gly
CCC
[ENA]
¢þ
>WENV181852859
OGWH01005796
[OGWH] freshwater metagenome; freshwater
1423
1352
-
Gly
CCC
[ENA]
¢þ
>WENV170018829
BBPD01001295
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6982
7053
+
Gly
CCC
[ENA]
¢þ
>WENV170020678
BBPE01017900
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
525
596
+
Gly
CCC
[ENA]
¢þ
>C181078404
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
1431243
1431314
+
Gly
CCC
-
¡û
>C191001246
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4575112
4575183
+
Gly
CCC
-
¡û
>C191099566
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
2290314
2290243
-
Gly
CCC
-
¡û
>W09101118
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
911490
911419
-
Gly
CCC
[ENA]
¡û
>W1910596187
LAGX01000021
Cyanobacteriota
Nostoc linckia z1 [LAGX]
62241
62168
-
Gly
CCC
[ENA]
¡û
>W1910596368
LAGZ01000019
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
64877
64804
-
Gly
CCC
[ENA]
¡û
>W1910596453
LAHA01000019
Cyanobacteriota
Nostoc linckia z4 [LAHA]
62224
62151
-
Gly
CCC
[ENA]
¡û
>W1910596514
LAHB01000023
Cyanobacteriota
Nostoc linckia z6 [LAHB]
62214
62141
-
Gly
CCC
[ENA]
¡û
>W1910596642
LAHC01000060
Cyanobacteriota
Nostoc linckia z7 [LAHC]
62246
62173
-
Gly
CCC
[ENA]
¡û
>W1910596662
LAHD01000008
Cyanobacteriota
Nostoc linckia z8 [LAHD]
42692
42765
+
Gly
CCC
[ENA]
¡û
>W1910596765
LAHE01000038
Cyanobacteriota
Nostoc linckia z9 [LAHE]
7625
7698
+
Gly
CCC
[ENA]
¡û
>W1910596888
LAHF01000063
Cyanobacteriota
Nostoc linckia z13 [LAHF]
22169
22242
+
Gly
CCC
[ENA]
¡û
>W1910596979
LAHG01000073
Cyanobacteriota
Nostoc linckia z14 [LAHG]
22177
22250
+
Gly
CCC
[ENA]
¡û
>W1910597057
LAHH01000080
Cyanobacteriota
Nostoc linckia z15 [LAHH]
13066
12993
-
Gly
CCC
[ENA]
¡û
>W1910597152
LAHI01000084
Cyanobacteriota
Nostoc linckia z16 [LAHI]
13062
12989
-
Gly
CCC
[ENA]
¡û
>W1910597179
LAHJ01000012
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
42864
42937
+
Gly
CCC
[ENA]
¡û
>W1910792690
MRBZ01000102
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
11404
11333
-
Gly
CCC
[ENA]
¡û
>W1511013844
JHEG02000037
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
368584
368513
-
Gly
CCC
[ENA]
¡û
>C161038931
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
777645
777574
-
Gly
CCC
[Ensembl]
¡û
>C131004257
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
1137399
1137470
+
Gly
CCC
[Ensembl]
¡û
>C131004675
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
7390832
7390761
-
Gly
CCC
[Ensembl]
¡û
>W1610749246
LNAA01000043
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
6115
6044
-
Gly
CCC
[ENA]
¡û
>W1611066449
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
241370
241441
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK