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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.685648 (27 seq.)
>W131036555
ALVW01000016
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
131158
131229
+
Gly
CCC
[ENA]
¡û
>W131065832
ANNX01000026
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
56507
56578
+
Gly
CCC
[ENA]
¡û
>W1711335742
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
241370
241441
+
Gly
CCC
[ENA]
¡û
>W1711666715
MRCF01000014
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
11259
11330
+
Gly
CCC
[ENA]
¡û
>PL171000151
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
450135
450206
+
Gly
CCC
[ENA]
¡û
>C181078404
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
1431243
1431314
+
Gly
CCC
-
¡û
>C191001246
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4575112
4575183
+
Gly
CCC
-
¡û
>W1910008399
BDGE01000035
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
85016
85087
+
Gly
CCC
[ENA]
¡û
>W1910596187
LAGX01000021
Cyanobacteriota
Nostoc linckia z1 [LAGX]
62241
62168
-
Gly
CCC
[ENA]
¡û
>W1910596269
LAGY01000031
Cyanobacteriota
Nostoc linckia z2 [LAGY]
64820
64747
-
Gly
CCC
[ENA]
¡û
>W1910596368
LAGZ01000019
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
64877
64804
-
Gly
CCC
[ENA]
¡û
>W1910596453
LAHA01000019
Cyanobacteriota
Nostoc linckia z4 [LAHA]
62224
62151
-
Gly
CCC
[ENA]
¡û
>W1910596514
LAHB01000023
Cyanobacteriota
Nostoc linckia z6 [LAHB]
62214
62141
-
Gly
CCC
[ENA]
¡û
>W1910596642
LAHC01000060
Cyanobacteriota
Nostoc linckia z7 [LAHC]
62246
62173
-
Gly
CCC
[ENA]
¡û
>W1910596662
LAHD01000008
Cyanobacteriota
Nostoc linckia z8 [LAHD]
42692
42765
+
Gly
CCC
[ENA]
¡û
>W1910596765
LAHE01000038
Cyanobacteriota
Nostoc linckia z9 [LAHE]
7625
7698
+
Gly
CCC
[ENA]
¡û
>W1910596888
LAHF01000063
Cyanobacteriota
Nostoc linckia z13 [LAHF]
22169
22242
+
Gly
CCC
[ENA]
¡û
>W1910596979
LAHG01000073
Cyanobacteriota
Nostoc linckia z14 [LAHG]
22177
22250
+
Gly
CCC
[ENA]
¡û
>W1910597057
LAHH01000080
Cyanobacteriota
Nostoc linckia z15 [LAHH]
13066
12993
-
Gly
CCC
[ENA]
¡û
>W1910597152
LAHI01000084
Cyanobacteriota
Nostoc linckia z16 [LAHI]
13062
12989
-
Gly
CCC
[ENA]
¡û
>W1910597179
LAHJ01000012
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
42864
42937
+
Gly
CCC
[ENA]
¡û
>W1910792690
MRBZ01000102
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
11404
11333
-
Gly
CCC
[ENA]
¡û
>W1511013844
JHEG02000037
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
368584
368513
-
Gly
CCC
[ENA]
¡û
>C161038931
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
777645
777574
-
Gly
CCC
[Ensembl]
¡û
>C131004169
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3664540
3664469
-
Gly
CCC
[Ensembl]
¡û
>C131004257
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
1137399
1137470
+
Gly
CCC
[Ensembl]
¡û
>W1611066449
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
241370
241441
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK