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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.393046 (5 seq.)
>WENV171003540
NNBU01000334
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
1028
1103
+
Arg
CCG
[ENA]
¢þ
>WENV171003544
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
587
512
-
Arg
CCG
[ENA]
¢þ
>WENV171003664
NNBU01003492
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
108
33
-
Arg
CCG
[ENA]
¢þ
>PL191000448
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616180
616105
-
Arg
CCG
[ENA]
¡û
>PL191000516
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21540
21465
-
Arg
CCG
[ENA]
¡û
Identical group No.482259 (63 seq.)
>W1710882874
LMVE01000006
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
7676
7603
-
Arg
CCG
[ENA]
¡û
>W1711116517
LUBZ01000003
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
32259
32187
-
Arg
CCG
[ENA]
¡û
>W1711261785
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1438863
1438790
-
Arg
CCG
[ENA]
¡û
>W1711335595
MBQX01000083
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
32850
32923
+
Arg
CCG
[ENA]
¡û
>W1711335627
MBQY01000048
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
182096
182024
-
Arg
CCG
[ENA]
¡û
>W1711335751
MBRD01000005
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
296781
296709
-
Arg
CCG
[ENA]
¡û
>W1711711350
MTAV01000248
Cyanobacteriota
Nostoc sp. T09 [MTAV]
24075
24147
+
Arg
CCG
[ENA]
¡û
>W1711711367
MTAW01000112
Cyanobacteriota
Nostoc sp. 106C [MTAW]
36520
36448
-
Arg
CCG
[ENA]
¡û
>W1711711434
MTAX01000070
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
8163
8091
-
Arg
CCG
[ENA]
¡û
>PL171000156
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
181314
181242
-
Arg
CCG
[ENA]
¡û
>C001243
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
238386
238314
-
Arg
CCG
[Ensembl]
¡û
>w002259
AAAY02000018
Cyanobacteriota
Nostoc punctiforme [AAAY]
77165
77240
+
Arg
CCG
[ENA]
¡û
>C08006904
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5757868
5757940
+
Arg
CCG
[Ensembl]
¡û
>C181004743
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
751162
751234
+
Arg
CCG
-
¡û
>C181105240
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
6538862
6538790
-
Arg
CCG
-
¡û
>W09101150
AAEA01000004
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
6444
6372
-
Arg
CCG
[ENA]
¡û
>W09125764
ACIR01000110
Cyanobacteriota
Trichormus azollae 708 [ACIR]
584
658
+
Arg
CCG
[ENA]
¡û
>W1910175522
BJCE01000238
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
1076
1148
+
Arg
CCG
[ENA]
¡û
>W1910596188
LAGX01000025
Cyanobacteriota
Nostoc linckia z1 [LAGX]
4897
4969
+
Arg
CCG
[ENA]
¡û
>W1910596260
LAGY01000012
Cyanobacteriota
Nostoc linckia z2 [LAGY]
119815
119887
+
Arg
CCG
[ENA]
¡û
>W1910596408
LAGZ01000084
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
4913
4985
+
Arg
CCG
[ENA]
¡û
>W1910596442
LAHA01000004
Cyanobacteriota
Nostoc linckia z4 [LAHA]
25419
25347
-
Arg
CCG
[ENA]
¡û
>W1910596574
LAHB01000087
Cyanobacteriota
Nostoc linckia z6 [LAHB]
4901
4973
+
Arg
CCG
[ENA]
¡û
>W1910596651
LAHC01000099
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25396
25324
-
Arg
CCG
[ENA]
¡û
>W1910596729
LAHD01000098
Cyanobacteriota
Nostoc linckia z8 [LAHD]
4882
4954
+
Arg
CCG
[ENA]
¡û
>W1910596824
LAHE01000215
Cyanobacteriota
Nostoc linckia z9 [LAHE]
4764
4692
-
Arg
CCG
[ENA]
¡û
>W1910596905
LAHF01000283
Cyanobacteriota
Nostoc linckia z13 [LAHF]
4714
4642
-
Arg
CCG
[ENA]
¡û
>W1910596984
LAHG01000092
Cyanobacteriota
Nostoc linckia z14 [LAHG]
4882
4954
+
Arg
CCG
[ENA]
¡û
>W1910597073
LAHH01000294
Cyanobacteriota
Nostoc linckia z15 [LAHH]
5089
5017
-
Arg
CCG
[ENA]
¡û
>W1910597155
LAHI01000098
Cyanobacteriota
Nostoc linckia z16 [LAHI]
4192
4264
+
Arg
CCG
[ENA]
¡û
>W1910597244
LAHJ01000093
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
4885
4957
+
Arg
CCG
[ENA]
¡û
>W1910792696
MRBZ01000189
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
5809
5737
-
Arg
CCG
[ENA]
¡û
>W1910805260
MTPU01000017
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
145019
145091
+
Arg
CCG
[ENA]
¡û
>W1910859297
NBYN01000059
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
26762
26688
-
Arg
CCG
[ENA]
¡û
>W1910943182
NJHS01000039
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
8026
7953
-
Arg
CCG
[ENA]
¡û
>W1910943219
NJHT01000077
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
8026
7953
-
Arg
CCG
[ENA]
¡û
>W1910943247
NJHU01000020
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
104687
104760
+
Arg
CCG
[ENA]
¡û
>W1910943283
NJHV01000068
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
9645
9572
-
Arg
CCG
[ENA]
¡û
>W1910943321
NJHW01000011
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
50081
50154
+
Arg
CCG
[ENA]
¡û
>W1910943370
NJHX01000032
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
17760
17833
+
Arg
CCG
[ENA]
¡û
>W1910943434
NJHY01000296
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
50107
50180
+
Arg
CCG
[ENA]
¡û
>W1910943446
NJHZ01000020
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
7703
7630
-
Arg
CCG
[ENA]
¡û
>W1910943490
NJIA01000028
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
50020
50093
+
Arg
CCG
[ENA]
¡û
>W1911153667
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1267296
1267224
-
Arg
CCG
[ENA]
¡û
>W1911153705
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1439530
1439458
-
Arg
CCG
[ENA]
¡û
>W1810355681
PVMC01000083
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
58230
58303
+
Arg
CCG
[ENA]
¡û
>W10106047
ACYA01000091
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
9588
9515
-
Arg
CCG
[ENA]
¡û
>W10106075
ACYB01000037
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
111639
111714
+
Arg
CCG
[ENA]
¡û
>W11108370
ACYA01000091
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
9588
9515
-
Arg
CCG
[ENA]
¡û
>W11108398
ACYB01000037
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
111639
111714
+
Arg
CCG
[ENA]
¡û
>C11115551
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
5270362
5270288
-
Arg
CCG
[Ensembl]
¡û
>W1511396999
JTCM01000002
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
201867
201939
+
Arg
CCG
[ENA]
¡û
>C161038873
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
1725020
1725092
+
Arg
CCG
[Ensembl]
¡û
>W1610003551
AGCR01000055
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
5713
5785
+
Arg
CCG
[ENA]
¡û
>W1610084868
CDHJ01000128
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
26138
26066
-
Arg
CCG
[ENA]
¡û
>W1610656796
LJOR01000037
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
57772
57844
+
Arg
CCG
[ENA]
¡û
>W1610744800
LMVE01000006
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
7676
7603
-
Arg
CCG
[ENA]
¡û
>W1610927759
LUBZ01000003
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
32259
32187
-
Arg
CCG
[ENA]
¡û
>W1611023760
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1438863
1438790
-
Arg
CCG
[ENA]
¡û
>W1611066458
MBRD01000005
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
296781
296709
-
Arg
CCG
[ENA]
¡û
>W1710004171
AGCR01000055
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
5713
5785
+
Arg
CCG
[ENA]
¡û
>W1710088020
BDUC01000002
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
40579
40505
-
Arg
CCG
[ENA]
¡û
>W1710089730
CDHJ01000128
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
26138
26066
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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