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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90126 (4 seq.)
>PL171000185
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
56497
56583
+
Ser
CGA
[ENA]
¡û
>C181004984
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
7179420
7179334
-
Ser
CGA
-
¡û
>W1511501684
JXCA01000015
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
498064
497978
-
Ser
CGA
[ENA]
¡û
>W1511501726
JXCB01000008
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
1696581
1696495
-
Ser
CGA
[ENA]
¡û
Identical group No.97395 (6 seq.)
>W1711081245
LSSA01000321
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
26825
26911
+
Ser
CGA
[ENA]
¡û
>PL171000154
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
1195933
1196019
+
Ser
CGA
[ENA]
¡û
>WENV171003433
NNBU01000019
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
31330
31416
+
Ser
CGA
[ENA]
¢þ
>WENV171003676
NNBV01000034
[NNBV] plant metagenome; symbiotic tissue sample KVS11
5511
5425
-
Ser
CGA
[ENA]
¢þ
>C181137822
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5666913
5666827
-
Ser
CGA
-
¡û
>W1910792638
MRBZ01000003
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
80239
80153
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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