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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401468 (28 seq.)
>W1711081229
LSSA01000098
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
37746
37675
-
Thr
CGT
[ENA]
¡û
>W1711283592
LZQD01000001
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
899864
899935
+
Thr
CGT
[ENA]
¡û
>PL171000152
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
1132553
1132624
+
Thr
CGT
[ENA]
¡û
>C001210
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
3948182
3948253
+
Thr
CGT
[Ensembl]
¡û
>C015286
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
4360902
4360973
+
Thr
CGT
[Ensembl]
¡û
>W141022915
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
727051
726980
-
Thr
CGT
[ENA]
¡û
>w002261
AAAY02000024
Cyanobacteriota
Nostoc punctiforme [AAAY]
49596
49670
+
Thr
CGT
[ENA]
¡û
>C08006921
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7131335
7131264
-
Thr
CGT
[Ensembl]
¡û
>WENV171003075
NNBT01000086
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
2310
2239
-
Thr
CGT
[ENA]
¢þ
>WENV171003486
NNBU01000106
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
15546
15617
+
Thr
CGT
[ENA]
¢þ
>WENV171003681
NNBV01000104
[NNBV] plant metagenome; symbiotic tissue sample KVS11
19569
19498
-
Thr
CGT
[ENA]
¢þ
>W09101148
AAEA01000004
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
261603
261532
-
Thr
CGT
[ENA]
¡û
>C181105266
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2523194
2523123
-
Thr
CGT
-
¡û
>C181137762
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
1200509
1200438
-
Thr
CGT
-
¡û
>C181137798
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
1735807
1735878
+
Thr
CGT
-
¡û
>W09125753
ACIR01000038
Cyanobacteriota
Trichormus azollae 708 [ACIR]
18747
18818
+
Thr
CGT
[ENA]
¡û
>C191083060
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
4920447
4920376
-
Thr
CGT
-
¡û
>W1910020531
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
4395183
4395112
-
Thr
CGT
[ENA]
¡û
>W1910646646
LWSY01000068
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
108313
108242
-
Thr
CGT
[ENA]
¡û
>W1910792681
MRBZ01000046
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
49175
49104
-
Thr
CGT
[ENA]
¡û
>W1911118664
NOLI01000079
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
403
332
-
Thr
CGT
[ENA]
¡û
>W1911118732
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
770100
770171
+
Thr
CGT
[ENA]
¡û
>W1911118806
NOLK01000025
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
9837
9908
+
Thr
CGT
[ENA]
¡û
>W1911244309
NSHF01000598
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
2583
2654
+
Thr
CGT
[ENA]
¡û
>C11115532
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
633774
633845
+
Thr
CGT
[Ensembl]
¡û
>C131004929
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
5758904
5758833
-
Thr
CGT
[Ensembl]
¡û
>C131004163
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
4741075
4741004
-
Thr
CGT
[Ensembl]
¡û
>W1610656781
LJOR01000005
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
32511
32582
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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