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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = CTT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370757 (2 seq.)
>PL191000016
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74150
74225
+
Lys
CTT
[ENA]
¡û
>C131010328
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5193778
5193703
-
Lys
CTT
[Ensembl]
¡û
Identical group No.385320 (1 seq.)
>PL171000522
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1109
1034
-
Lys
CTT
[ENA]
¡û
Identical group No.400856 (53 seq.)
>W1710882889
LMVE01000048
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
143674
143602
-
Lys
CTT
[ENA]
¡û
>W1711116522
LUBZ01000006
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
117911
117839
-
Lys
CTT
[ENA]
¡û
>W1711261773
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2545485
2545557
+
Lys
CTT
[ENA]
¡û
>W1711335584
MBQX01000047
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
135727
135655
-
Lys
CTT
[ENA]
¡û
>W1711335630
MBQY01000058
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
24613
24685
+
Lys
CTT
[ENA]
¡û
>W1711711335
MTAV01000090
Cyanobacteriota
Nostoc sp. T09 [MTAV]
1090
1016
-
Lys
CTT
[ENA]
¡û
>W1711711409
MTAW01000237
Cyanobacteriota
Nostoc sp. 106C [MTAW]
41099
41173
+
Lys
CTT
[ENA]
¡û
>W1711711440
MTAX01000089
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
14169
14095
-
Lys
CTT
[ENA]
¡û
>PL171000092
AP018181
Cyanobacteria
Nostoc carneum NIES-2107 plasmid:plasmid1
100584
100658
+
Lys
CTT
[ENA]
¡û
>WENV181855359
OGWL01010745
[OGWL] freshwater metagenome; freshwater
332
260
-
Lys
CTT
[ENA]
¢þ
>C181004771
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
6357937
6357864
-
Lys
CTT
-
¡û
>W09125751
ACIR01000019
Cyanobacteriota
Trichormus azollae 708 [ACIR]
12894
12966
+
Lys
CTT
[ENA]
¡û
>W1910596245
LAGX01000068
Cyanobacteriota
Nostoc linckia z1 [LAGX]
21307
21235
-
Lys
CTT
[ENA]
¡û
>W1910596329
LAGY01000093
Cyanobacteriota
Nostoc linckia z2 [LAGY]
21301
21229
-
Lys
CTT
[ENA]
¡û
>W1910596373
LAGZ01000031
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
21298
21226
-
Lys
CTT
[ENA]
¡û
>W1910596469
LAHA01000055
Cyanobacteriota
Nostoc linckia z4 [LAHA]
21299
21227
-
Lys
CTT
[ENA]
¡û
>W1910596573
LAHB01000085
Cyanobacteriota
Nostoc linckia z6 [LAHB]
3777
3705
-
Lys
CTT
[ENA]
¡û
>W1910596649
LAHC01000091
Cyanobacteriota
Nostoc linckia z7 [LAHC]
27702
27774
+
Lys
CTT
[ENA]
¡û
>W1910596728
LAHD01000094
Cyanobacteriota
Nostoc linckia z8 [LAHD]
3903
3831
-
Lys
CTT
[ENA]
¡û
>W1910596787
LAHE01000047
Cyanobacteriota
Nostoc linckia z9 [LAHE]
21355
21283
-
Lys
CTT
[ENA]
¡û
>W1910596890
LAHF01000082
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27679
27751
+
Lys
CTT
[ENA]
¡û
>W1910596988
LAHG01000122
Cyanobacteriota
Nostoc linckia z14 [LAHG]
21919
21991
+
Lys
CTT
[ENA]
¡û
>W1910597059
LAHH01000102
Cyanobacteriota
Nostoc linckia z15 [LAHH]
3761
3689
-
Lys
CTT
[ENA]
¡û
>W1910597154
LAHI01000094
Cyanobacteriota
Nostoc linckia z16 [LAHI]
3764
3692
-
Lys
CTT
[ENA]
¡û
>W1910597242
LAHJ01000088
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
27700
27772
+
Lys
CTT
[ENA]
¡û
>W1910792691
MRBZ01000107
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
9696
9770
+
Lys
CTT
[ENA]
¡û
>W1910805287
MTPU01000054
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
132236
132164
-
Lys
CTT
[ENA]
¡û
>W1910859288
NBYN01000054
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
178857
178785
-
Lys
CTT
[ENA]
¡û
>W1910943158
NJHS01000004
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
135721
135649
-
Lys
CTT
[ENA]
¡û
>W1910943201
NJHT01000006
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
58093
58165
+
Lys
CTT
[ENA]
¡û
>W1910943242
NJHU01000013
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
58076
58148
+
Lys
CTT
[ENA]
¡û
>W1910943311
NJHV01000595
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
19360
19288
-
Lys
CTT
[ENA]
¡û
>W1910943315
NJHW01000002
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
62740
62812
+
Lys
CTT
[ENA]
¡û
>W1910943362
NJHX01000019
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
60783
60711
-
Lys
CTT
[ENA]
¡û
>W1910943397
NJHY01000001
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
62766
62838
+
Lys
CTT
[ENA]
¡û
>W1910943438
NJHZ01000004
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
62363
62435
+
Lys
CTT
[ENA]
¡û
>W1910943510
NJIA01000279
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
135497
135425
-
Lys
CTT
[ENA]
¡û
>W1911153654
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
2191804
2191876
+
Lys
CTT
[ENA]
¡û
>W1911153694
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
2485200
2485272
+
Lys
CTT
[ENA]
¡û
>W1810355667
PVMC01000057
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
177876
177804
-
Lys
CTT
[ENA]
¡û
>W10106009
ACYA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
72656
72728
+
Lys
CTT
[ENA]
¡û
>W10106086
ACYB01000047
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
21963
22035
+
Lys
CTT
[ENA]
¡û
>W11108332
ACYA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
72656
72728
+
Lys
CTT
[ENA]
¡û
>W11108409
ACYB01000047
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
21963
22035
+
Lys
CTT
[ENA]
¡û
>C11115536
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
1740474
1740546
+
Lys
CTT
[Ensembl]
¡û
>W1610003514
AGCR01000004
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
158663
158589
-
Lys
CTT
[ENA]
¡û
>W1610084857
CDHJ01000089
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
10849
10920
+
Lys
CTT
[ENA]
¡û
>W1610744815
LMVE01000048
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
143674
143602
-
Lys
CTT
[ENA]
¡û
>W1610927764
LUBZ01000006
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
117911
117839
-
Lys
CTT
[ENA]
¡û
>W1610931019
LUFH01000753
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
825
751
-
Lys
CTT
[ENA]
¡û
>W1611023748
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2545485
2545557
+
Lys
CTT
[ENA]
¡û
>W1710004134
AGCR01000004
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
158663
158589
-
Lys
CTT
[ENA]
¡û
>W1710089719
CDHJ01000089
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
10849
10920
+
Lys
CTT
[ENA]
¡û
Identical group No.428857 (19 seq.)
>W131058332
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4840420
4840494
+
Lys
CTT
[ENA]
¡û
>W131065825
ANNX01000019
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
28030
27956
-
Lys
CTT
[ENA]
¡û
>PL171000107
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22808
22882
+
Lys
CTT
[ENA]
¡û
>PL171000125
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
170976
170902
-
Lys
CTT
[ENA]
¡û
>WENV171003654
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2486
2412
-
Lys
CTT
[ENA]
¢þ
>C181004795
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1809244
1809170
-
Lys
CTT
-
¡û
>W1910596235
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26904
26978
+
Lys
CTT
[ENA]
¡û
>W1910596319
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26905
26979
+
Lys
CTT
[ENA]
¡û
>W1910596400
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26905
26979
+
Lys
CTT
[ENA]
¡û
>W1910596482
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26903
26977
+
Lys
CTT
[ENA]
¡û
>W1910596562
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26896
26970
+
Lys
CTT
[ENA]
¡û
>W1910596633
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25368
25294
-
Lys
CTT
[ENA]
¡û
>W1910596710
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26903
26977
+
Lys
CTT
[ENA]
¡û
>W1910596778
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28085
28159
+
Lys
CTT
[ENA]
¡û
>W1910596854
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26887
26961
+
Lys
CTT
[ENA]
¡û
>W1910596966
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27125
27199
+
Lys
CTT
[ENA]
¡û
>W1910597012
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28808
28882
+
Lys
CTT
[ENA]
¡û
>W1910597137
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26888
26962
+
Lys
CTT
[ENA]
¡û
>W1910597233
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56525
56599
+
Lys
CTT
[ENA]
¡û
Identical group No.458619 (1 seq.)
>PL191000009
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71961
72033
+
Lys
CTT
[ENA]
¡û
Identical group No.497001 (5 seq.)
>PL171000097
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21597
21670
+
Lys
CTT
[ENA]
¡û
>PL171000118
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171949
171876
-
Lys
CTT
[ENA]
¡û
>PL171000197
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
10795
10868
+
Lys
CTT
[ENA]
¡û
>W141038534
ALVX01000038
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
768
695
-
Lys
CTT
[ENA]
¡û
>PL191000384
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3420
3349
-
Lys
CTT
[ENA]
¡û
Identical group No.506371 (2 seq.)
>PL191000520
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21206
21135
-
Lys
CTT
[ENA]
¡û
>W1911118833
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19430
19501
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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