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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197273 (4 seq.)
>PL171000176
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100245
100319
+
Phe
GAA
[ENA]
¡û
>W1610003570
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1798
1872
+
Phe
GAA
[ENA]
¡û
>C131010322
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5194595
5194521
-
Phe
GAA
[Ensembl]
¡û
>W1710004190
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1798
1872
+
Phe
GAA
[ENA]
¡û
Identical group No.220763 (3 seq.)
>PL171000162
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
3594
3520
-
Phe
GAA
[ENA]
¡û
>W141038688
ALWB01000443
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
358
432
+
Phe
GAA
[ENA]
¡û
>C191000316
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
3032665
3032590
-
Phe
GAA
-
¡û
Identical group No.225920 (10 seq.)
>W1711081258
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23839
23765
-
Phe
GAA
[ENA]
¡û
>W1711711305
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
91953
91879
-
Phe
GAA
[ENA]
¡û
>PL171000011
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51437
51363
-
Phe
GAA
[Ensembl]
¡û
>PL171000085
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21121
21047
-
Phe
GAA
[ENA]
¡û
>PL171000121
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171481
171407
-
Phe
GAA
[ENA]
¡û
>PL171000133
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4707
4781
+
Phe
GAA
[ENA]
¡û
>W1910646682
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24256
24182
-
Phe
GAA
[ENA]
¡û
>W1610003537
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
31152
31078
-
Phe
GAA
[ENA]
¡û
>C131005050
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471789
2471863
+
Phe
GAA
[Ensembl]
¡û
>W1710004157
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
31152
31078
-
Phe
GAA
[ENA]
¡û
Identical group No.231073 (3 seq.)
>PL171000517
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1778
1704
-
Phe
GAA
[ENA]
¡û
>PL191000387
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2982
2908
-
Phe
GAA
[ENA]
¡û
>C181078418
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6325579
6325653
+
Phe
GAA
-
¡û
Identical group No.238939 (5 seq.)
>W131058325
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4839748
4839822
+
Phe
GAA
[ENA]
¡û
>PL171000100
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22162
22236
+
Phe
GAA
[ENA]
¡û
>WENV171003647
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3064
2990
-
Phe
GAA
[ENA]
¢þ
>PL191000522
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20765
20691
-
Phe
GAA
[ENA]
¡û
>W1911118835
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19871
19945
+
Phe
GAA
[ENA]
¡û
Identical group No.348668 (42 seq.)
>W1711261782
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1904744
1904672
-
Phe
GAA
[ENA]
¡û
>W1711711410
MTAW01000238
Cyanobacteriota
Nostoc sp. 106C [MTAW]
15622
15694
+
Phe
GAA
[ENA]
¡û
>PL171000149
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
293692
293764
+
Phe
GAA
[ENA]
¡û
>C171097544
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
7200481
7200409
-
Phe
GAA
-
¡û
>CHL1810001773
FJ556581
Viridiplantae
Alsophila spinulosa (FJ556581)
49041
49113
+
Phe
GAA
[ENA]
¡û
>CHL1810002457
GU191333
Viridiplantae
Isoetes flaccida (GU191333)
39453
39381
-
Phe
GAA
[ENA]
¡û
>CHL1810009706
KF225592
Viridiplantae
Osmundastrum cinnamomeum (KF225592)
63793
63865
+
Phe
GAA
[ENA]
¡û
>CHL1810009733
KF225594
Viridiplantae
Diplopterygium glaucum (KF225594)
62663
62735
+
Phe
GAA
[ENA]
¡û
>CHL1810011389
KJ397925
Viridiplantae
Chlorella sorokiniana crs4 (KJ397925)
17044
17118
+
Phe
GAA
[ENA]
¡û
>CHL1810012806
KJ746600
Viridiplantae
Nephroselmis astigmatica (KJ746600)
7689
7761
+
Phe
GAA
[ENA]
¡û
>CHL1810014941
KM462876
Viridiplantae
Microthamnion kuetzingianum (KM462876)
6305
6233
-
Phe
GAA
[ENA]
¡û
>CHL1810015267
KM462887
Viridiplantae
Elliptochloris bilobata (KM462887)
117789
117861
+
Phe
GAA
[ENA]
¡û
>CHL1810060635
MH105066
Viridiplantae
Cibotium barometz (MH105066)
48862
48934
+
Phe
GAA
[ENA]
¡û
>W1910175520
BJCE01000227
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
1168
1240
+
Phe
GAA
[ENA]
¡û
>W1910596244
LAGX01000067
Cyanobacteriota
Nostoc linckia z1 [LAGX]
801
728
-
Phe
GAA
[ENA]
¡û
>W1910596490
LAHA01000060
Cyanobacteriota
Nostoc linckia z4 [LAHA]
972
899
-
Phe
GAA
[ENA]
¡û
>W1910596570
LAHB01000060
Cyanobacteriota
Nostoc linckia z6 [LAHB]
946
873
-
Phe
GAA
[ENA]
¡û
>W1910596719
LAHD01000052
Cyanobacteriota
Nostoc linckia z8 [LAHD]
8619
8546
-
Phe
GAA
[ENA]
¡û
>W1910596823
LAHE01000208
Cyanobacteriota
Nostoc linckia z9 [LAHE]
796
723
-
Phe
GAA
[ENA]
¡û
>W1910596904
LAHF01000277
Cyanobacteriota
Nostoc linckia z13 [LAHF]
249
176
-
Phe
GAA
[ENA]
¡û
>W1910597074
LAHH01000297
Cyanobacteriota
Nostoc linckia z15 [LAHH]
266
193
-
Phe
GAA
[ENA]
¡û
>W1910859262
NBYN01000009
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
63546
63618
+
Phe
GAA
[ENA]
¡û
>W1910943171
NJHS01000015
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
977
1049
+
Phe
GAA
[ENA]
¡û
>W1910943208
NJHT01000014
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
433
505
+
Phe
GAA
[ENA]
¡û
>W1910943272
NJHU01000429
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
421
493
+
Phe
GAA
[ENA]
¡û
>W1910943306
NJHV01000541
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
28058
28130
+
Phe
GAA
[ENA]
¡û
>W1910943348
NJHW01000456
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
56534
56606
+
Phe
GAA
[ENA]
¡û
>W1910943409
NJHY01000022
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
54091
54163
+
Phe
GAA
[ENA]
¡û
>W1910943461
NJHZ01000079
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
72815
72743
-
Phe
GAA
[ENA]
¡û
>W1910943512
NJIA01000301
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
48758
48686
-
Phe
GAA
[ENA]
¡û
>CHL090100338
AF166114
Viridiplantae
Mesostigma viride
54927
54999
+
Phe
GAA
[ENA]
¡û
>CHL090103010
EF506945
Viridiplantae
Leptosira terrestris
105570
105642
+
Phe
GAA
[ENA]
¡û
>W10106032
ACYA01000032
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
76234
76162
-
Phe
GAA
[ENA]
¡û
>W10106063
ACYB01000029
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
50565
50637
+
Phe
GAA
[ENA]
¡û
>W11108355
ACYA01000032
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
76234
76162
-
Phe
GAA
[ENA]
¡û
>W11108386
ACYB01000029
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
50565
50637
+
Phe
GAA
[ENA]
¡û
>W1511397079
JTCM01000037
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
545879
545951
+
Phe
GAA
[ENA]
¡û
>C161002490
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
76071
76143
+
Phe
GAA
[Ensembl]
¡û
>W1610003519
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
921657
921729
+
Phe
GAA
[ENA]
¡û
>C131004280
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5814988
5814916
-
Phe
GAA
[Ensembl]
¡û
>W1611023757
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1904744
1904672
-
Phe
GAA
[ENA]
¡û
>W1710004139
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
921657
921729
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK