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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302036 (3 seq.)
>PL171000176
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100245
100319
+
Phe
GAA
[ENA]
¡û
>W1610003570
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1798
1872
+
Phe
GAA
[ENA]
¡û
>W1710004190
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1798
1872
+
Phe
GAA
[ENA]
¡û
Identical group No.335964 (5 seq.)
>W1711711305
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
91953
91879
-
Phe
GAA
[ENA]
¡û
>PL171000121
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171481
171407
-
Phe
GAA
[ENA]
¡û
>C181004787
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1810942
1810868
-
Phe
GAA
-
¡û
>W1610003537
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
31152
31078
-
Phe
GAA
[ENA]
¡û
>W1710004157
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
31152
31078
-
Phe
GAA
[ENA]
¡û
Identical group No.361504 (4 seq.)
>PL171000011
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51437
51363
-
Phe
GAA
[Ensembl]
¡û
>PL171000085
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21121
21047
-
Phe
GAA
[ENA]
¡û
>PL171000133
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4707
4781
+
Phe
GAA
[ENA]
¡û
>C131005050
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471789
2471863
+
Phe
GAA
[Ensembl]
¡û
Identical group No.397496 (2 seq.)
>PL191000522
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20765
20691
-
Phe
GAA
[ENA]
¡û
>W1911118835
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19871
19945
+
Phe
GAA
[ENA]
¡û
Identical group No.482258 (49 seq.)
>W1710882894
LMVE01000081
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
78578
78506
-
Phe
GAA
[ENA]
¡û
>W1711116534
LUBZ01000014
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
51886
51814
-
Phe
GAA
[ENA]
¡û
>W1711261782
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1904744
1904672
-
Phe
GAA
[ENA]
¡û
>W1711335602
MBQX01000132
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
47699
47627
-
Phe
GAA
[ENA]
¡û
>W1711335642
MBQY01000073
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
59652
59580
-
Phe
GAA
[ENA]
¡û
>W1711711296
MTAV01000012
Cyanobacteriota
Nostoc sp. T09 [MTAV]
14747
14819
+
Phe
GAA
[ENA]
¡û
>W1711711410
MTAW01000238
Cyanobacteriota
Nostoc sp. 106C [MTAW]
15622
15694
+
Phe
GAA
[ENA]
¡û
>W1711711475
MTAX01000148
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
3582
3654
+
Phe
GAA
[ENA]
¡û
>PL171000149
AP018223
Cyanobacteria
Nostoc linckia NIES-25 plasmid:plasmid1
293692
293764
+
Phe
GAA
[ENA]
¡û
>C171097544
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
7200481
7200409
-
Phe
GAA
-
¡û
>CHL1810001773
FJ556581
Viridiplantae
Alsophila spinulosa (FJ556581)
49041
49113
+
Phe
GAA
[ENA]
¡û
>CHL1810008485
KC536646
Viridiplantae
Marsilea crenata (KC536646)
50663
50735
+
Phe
GAA
[ENA]
¡û
>CHL1810009733
KF225594
Viridiplantae
Diplopterygium glaucum (KF225594)
62663
62735
+
Phe
GAA
[ENA]
¡û
>C181004773
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5670103
5670031
-
Phe
GAA
-
¡û
>C181078413
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
4841916
4841988
+
Phe
GAA
-
¡û
>W1910175520
BJCE01000227
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
1168
1240
+
Phe
GAA
[ENA]
¡û
>W1910596244
LAGX01000067
Cyanobacteriota
Nostoc linckia z1 [LAGX]
801
728
-
Phe
GAA
[ENA]
¡û
>W1910596327
LAGY01000066
Cyanobacteriota
Nostoc linckia z2 [LAGY]
968
895
-
Phe
GAA
[ENA]
¡û
>W1910596490
LAHA01000060
Cyanobacteriota
Nostoc linckia z4 [LAHA]
972
899
-
Phe
GAA
[ENA]
¡û
>W1910596570
LAHB01000060
Cyanobacteriota
Nostoc linckia z6 [LAHB]
946
873
-
Phe
GAA
[ENA]
¡û
>W1910596719
LAHD01000052
Cyanobacteriota
Nostoc linckia z8 [LAHD]
8619
8546
-
Phe
GAA
[ENA]
¡û
>W1910596823
LAHE01000208
Cyanobacteriota
Nostoc linckia z9 [LAHE]
796
723
-
Phe
GAA
[ENA]
¡û
>W1910596904
LAHF01000277
Cyanobacteriota
Nostoc linckia z13 [LAHF]
249
176
-
Phe
GAA
[ENA]
¡û
>W1910597074
LAHH01000297
Cyanobacteriota
Nostoc linckia z15 [LAHH]
266
193
-
Phe
GAA
[ENA]
¡û
>W1910805257
MTPU01000010
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
58334
58262
-
Phe
GAA
[ENA]
¡û
>W1910859262
NBYN01000009
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
63546
63618
+
Phe
GAA
[ENA]
¡û
>W1910943171
NJHS01000015
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
977
1049
+
Phe
GAA
[ENA]
¡û
>W1910943208
NJHT01000014
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
433
505
+
Phe
GAA
[ENA]
¡û
>W1910943272
NJHU01000429
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
421
493
+
Phe
GAA
[ENA]
¡û
>W1910943306
NJHV01000541
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
28058
28130
+
Phe
GAA
[ENA]
¡û
>W1910943348
NJHW01000456
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
56534
56606
+
Phe
GAA
[ENA]
¡û
>W1910943377
NJHX01000102
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
1413
1485
+
Phe
GAA
[ENA]
¡û
>W1910943409
NJHY01000022
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
54091
54163
+
Phe
GAA
[ENA]
¡û
>W1910943461
NJHZ01000079
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
72815
72743
-
Phe
GAA
[ENA]
¡û
>W1910943512
NJIA01000301
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
48758
48686
-
Phe
GAA
[ENA]
¡û
>W1911153664
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1647965
1647893
-
Phe
GAA
[ENA]
¡û
>W1911153703
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1833699
1833627
-
Phe
GAA
[ENA]
¡û
>W1810355662
PVMC01000054
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
32509
32581
+
Phe
GAA
[ENA]
¡û
>W10106032
ACYA01000032
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
76234
76162
-
Phe
GAA
[ENA]
¡û
>W10106063
ACYB01000029
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
50565
50637
+
Phe
GAA
[ENA]
¡û
>W11108355
ACYA01000032
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
76234
76162
-
Phe
GAA
[ENA]
¡û
>W11108386
ACYB01000029
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
50565
50637
+
Phe
GAA
[ENA]
¡û
>C161002490
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
76071
76143
+
Phe
GAA
[Ensembl]
¡û
>W1610003519
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
921657
921729
+
Phe
GAA
[ENA]
¡û
>C131004280
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5814988
5814916
-
Phe
GAA
[Ensembl]
¡û
>W1610744820
LMVE01000081
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
78578
78506
-
Phe
GAA
[ENA]
¡û
>W1610927776
LUBZ01000014
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
51886
51814
-
Phe
GAA
[ENA]
¡û
>W1611023757
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
1904744
1904672
-
Phe
GAA
[ENA]
¡û
>W1710004139
AGCR01000005
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
921657
921729
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK