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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.613910 (2 seq.)
>PL171000083
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21644
21569
-
Cys
GCA
[ENA]
¡û
>C131005048
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471266
2471341
+
Cys
GCA
[Ensembl]
¡û
Identical group No.655889 (6 seq.)
>PL171000093
AP018181
Cyanobacteria
Nostoc carneum NIES-2107 plasmid:plasmid1
480391
480462
+
Cys
GCA
[ENA]
¡û
>C171097565
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
1219475
1219404
-
Cys
GCA
-
¡û
>C181004774
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5362895
5362824
-
Cys
GCA
-
¡û
>W1910792686
MRBZ01000087
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
21375
21304
-
Cys
GCA
[ENA]
¡û
>W1610003513
AGCR01000003
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
28968
28897
-
Cys
GCA
[ENA]
¡û
>W1710004133
AGCR01000003
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
28968
28897
-
Cys
GCA
[ENA]
¡û
Identical group No.812910 (4 seq.)
>PL191000007
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71707
71780
+
Cys
GCA
[ENA]
¡û
>W1610003533
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
32004
31931
-
Cys
GCA
[ENA]
¡û
>C131010320
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5195363
5195290
-
Cys
GCA
[Ensembl]
¡û
>W1710004153
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
32004
31931
-
Cys
GCA
[ENA]
¡û
Identical group No.818046 (1 seq.)
>PL191000517
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21459
21386
-
Cys
GCA
[ENA]
¡û
Identical group No.833166 (1 seq.)
>PL191000449
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616099
616026
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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