This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377504 (2 seq.)
>PL171000083
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21644
21569
-
Cys
GCA
[ENA]
¡û
>C131005048
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471266
2471341
+
Cys
GCA
[Ensembl]
¡û
Identical group No.400857 (25 seq.)
>W1711577078
MNPM01000002
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
213100
213029
-
Cys
GCA
[ENA]
¡û
>W1711666717
MRCF01000016
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
53749
53675
-
Cys
GCA
[ENA]
¡û
>W1711711398
MTAW01000176
Cyanobacteriota
Nostoc sp. 106C [MTAW]
17628
17557
-
Cys
GCA
[ENA]
¡û
>W1711711462
MTAX01000106
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
29906
29835
-
Cys
GCA
[ENA]
¡û
>PL171000093
AP018181
Cyanobacteria
Nostoc carneum NIES-2107 plasmid:plasmid1
480391
480462
+
Cys
GCA
[ENA]
¡û
>C171097565
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
1219475
1219404
-
Cys
GCA
-
¡û
>W131036503
ALVS01000069
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
304285
304214
-
Cys
GCA
[ENA]
¡û
>W131222894
AUBQ01000004
Thermodesulfobacteriota
Fundidesulfovibrio putealis DSM 16056 [AUBQ]
406646
406720
+
Cys
GCA
[ENA]
¡û
>C001230
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
3175692
3175621
-
Cys
GCA
[Ensembl]
¡û
>C015295
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
6370337
6370266
-
Cys
GCA
[Ensembl]
¡û
>WENV180098146
MTBK01230950
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
102
176
+
Cys
GCA
[ENA]
¢þ
>W141021276
AJLJ01000275
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
6736
6665
-
Cys
GCA
[ENA]
¡û
>W141021399
AJLM01000061
Cyanobacteriota
Chlorogloeopsis fritschii PCC 9212 [AJLM]
7157
7086
-
Cys
GCA
[ENA]
¡û
>W141021441
AJLN01000097
Cyanobacteriota
Chlorogloeopsis fritschii PCC 6912 [AJLN]
81833
81904
+
Cys
GCA
[ENA]
¡û
>W141038519
ALVX01000023
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
20467
20396
-
Cys
GCA
[ENA]
¡û
>WENV170723966
LSQX01287462
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
26338
26412
+
Cys
GCA
[ENA]
¢þ
>C181004774
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5362895
5362824
-
Cys
GCA
-
¡û
>W09101146
AAEA01000003
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
255353
255282
-
Cys
GCA
[ENA]
¡û
>W1910731327
MHDQ01000222
Nitrospinota
Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 [MHDQ]
1287
1361
+
Cys
GCA
[ENA]
¡û
>W1910792686
MRBZ01000087
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
21375
21304
-
Cys
GCA
[ENA]
¡û
>W1910842094
NAPS01000002
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
2308626
2308555
-
Cys
GCA
[ENA]
¡û
>W1511504585
JXIJ01000127
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
213100
213029
-
Cys
GCA
[ENA]
¡û
>W1610003513
AGCR01000003
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
28968
28897
-
Cys
GCA
[ENA]
¡û
>C131010308
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6238175
6238246
+
Cys
GCA
[Ensembl]
¡û
>W1710004133
AGCR01000003
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
28968
28897
-
Cys
GCA
[ENA]
¡û
Identical group No.505293 (3 seq.)
>WENV171003545
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
506
433
-
Cys
GCA
[ENA]
¢þ
>PL191000007
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71707
71780
+
Cys
GCA
[ENA]
¡û
>C131010320
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5195363
5195290
-
Cys
GCA
[Ensembl]
¡û
Identical group No.506370 (2 seq.)
>PL191000449
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616099
616026
-
Cys
GCA
[ENA]
¡û
>PL191000517
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21459
21386
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK