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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238914 (1 seq.)
>PL193000001
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71543
71620
+
Asp
GTC
[ENA]
¡û
Identical group No.239601 (1 seq.)
>PL171000195
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
10537
10614
+
Asp
GTC
[ENA]
¡û
Identical group No.239815 (1 seq.)
>PL171000094
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21158
21235
+
Asp
GTC
[ENA]
¡û
Identical group No.265388 (1 seq.)
>PL171000157
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
4343
4269
-
Asp
GTC
[ENA]
¡û
Identical group No.429467 (1 seq.)
>PL171000512
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
3015
2940
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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