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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GTC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152591 (18 seq.)
>W131058319
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4838745
4838822
+
Asp
GTC
[ENA]
¡û
>W1711711299
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
92912
92835
-
Asp
GTC
[ENA]
¡û
>W1711711379
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
15958
16035
+
Asp
GTC
[ENA]
¡û
>PL171000094
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
21158
21235
+
Asp
GTC
[ENA]
¡û
>PL171000115
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
172291
172214
-
Asp
GTC
[ENA]
¡û
>PL171000173
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
99503
99580
+
Asp
GTC
[ENA]
¡û
>WENV171003539
NNBU01000334
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
869
946
+
Asp
GTC
[ENA]
¢þ
>WENV171003543
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
746
669
-
Asp
GTC
[ENA]
¢þ
>WENV171003663
NNBU01003492
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
267
190
-
Asp
GTC
[ENA]
¢þ
>PL191000381
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
3764
3687
-
Asp
GTC
[ENA]
¡û
>PL191000447
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
616339
616262
-
Asp
GTC
[ENA]
¡û
>PL191000515
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
21699
21622
-
Asp
GTC
[ENA]
¡û
>C181004781
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1811899
1811822
-
Asp
GTC
-
¡û
>C181137718
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4436893
4436970
+
Asp
GTC
-
¡û
>W1911118828
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
18935
19012
+
Asp
GTC
[ENA]
¡û
>W1610003567
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1056
1133
+
Asp
GTC
[ENA]
¡û
>W1730034515
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
23026
23103
+
Asp
GTC
[ENA]
¡û
>W1710004187
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1056
1133
+
Asp
GTC
[ENA]
¡û
Identical group No.154696 (1 seq.)
>PL193000001
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
71543
71620
+
Asp
GTC
[ENA]
¡û
Identical group No.155125 (1 seq.)
>PL171000195
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
10537
10614
+
Asp
GTC
[ENA]
¡û
Identical group No.167032 (6 seq.)
>PL171000082
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21805
21729
-
Asp
GTC
[ENA]
¡û
>W141021306
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
20156
20080
-
Asp
GTC
[ENA]
¡û
>W1911218648
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
10177
10101
-
Asp
GTC
[ENA]
¡û
>W1610003532
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
32168
32091
-
Asp
GTC
[ENA]
¡û
>C131005047
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471105
2471181
+
Asp
GTC
[Ensembl]
¡û
>W1710004152
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
32168
32091
-
Asp
GTC
[ENA]
¡û
Identical group No.172671 (1 seq.)
>PL171000157
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
4343
4269
-
Asp
GTC
[ENA]
¡û
Identical group No.231809 (3 seq.)
>PL171000512
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
3015
2940
-
Asp
GTC
[ENA]
¡û
>W141805229
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
2486557
2486633
+
Asp
GTC
[ENA]
¡û
>C151081762
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2484402
2484478
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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