This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250559 (16 seq.)
>W1711081272
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22055
21978
-
Pseudo
GTG
[ENA]
¡û
>WENV171003379
NNBT01007710
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
12541
12618
+
His
GTG
[ENA]
¢þ
>PL192000002
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615625
615549
-
His
GTG
[ENA]
¡û
>W1920000298
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27549
27625
+
His
GTG
[ENA]
¡û
>W1920000299
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27550
27626
+
His
GTG
[ENA]
¡û
>W1920000300
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27550
27626
+
His
GTG
[ENA]
¡û
>W1920000301
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27548
27624
+
His
GTG
[ENA]
¡û
>W1920000302
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27541
27617
+
His
GTG
[ENA]
¡û
>W1920000303
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24723
24647
-
His
GTG
[ENA]
¡û
>W1920000304
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27548
27624
+
His
GTG
[ENA]
¡û
>W1920000305
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28730
28806
+
His
GTG
[ENA]
¡û
>W1920000306
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27532
27608
+
His
GTG
[ENA]
¡û
>W1920000307
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27770
27846
+
His
GTG
[ENA]
¡û
>W1920000308
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29453
29529
+
His
GTG
[ENA]
¡û
>W1920000309
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27533
27609
+
His
GTG
[ENA]
¡û
>W1920000310
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
57170
57246
+
His
GTG
[ENA]
¡û
Identical group No.258156 (3 seq.)
>PL192000001
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74791
74867
+
His
GTG
[ENA]
¡û
>W1610003549
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
29725
29649
-
Pseudo
GTG
[ENA]
¡û
>W1710004169
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
29725
29649
-
Pseudo
GTG
[ENA]
¡û
Identical group No.302040 (3 seq.)
>PL171000184
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102985
103061
+
Pseudo
GTG
[ENA]
¡û
>W1610003578
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1070
1146
+
Pseudo
GTG
[ENA]
¡û
>W1710004198
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1070
1146
+
Pseudo
GTG
[ENA]
¡û
Identical group No.370702 (4 seq.)
>W131058337
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4841177
4841253
+
Pseudo
GTG
[ENA]
¡û
>PL191000396
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
1903
1828
-
His
GTG
[ENA]
¡û
>W1910646693
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23215
23140
-
His
GTG
[ENA]
¡û
>W1911118846
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20830
20905
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK