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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GTT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301704 (3 seq.)
>W1711711448
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
24092
24167
+
Asn
GTT
[ENA]
¡û
>PL191000388
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2899
2824
-
Asn
GTT
[ENA]
¡û
>W1911278515
NTFS01000035
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
5435
5361
-
Asn
GTT
[ENA]
¡û
Identical group No.381250 (1 seq.)
>PL171000163
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
3514
3440
-
Asn
GTT
[ENA]
¡û
Identical group No.416056 (5 seq.)
>PL171000122
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171398
171324
-
Asn
GTT
[ENA]
¡û
>WENV180015178
FQKF010395741
[FQKF] soil metagenome; Soil
97
23
-
Asn
GTT
[ENA]
¢þ
>WENV171003648
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2981
2907
-
Asn
GTT
[ENA]
¢þ
>PL191000523
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20682
20608
-
Asn
GTT
[ENA]
¡û
>C181137723
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437779
4437853
+
Asn
GTT
-
¡û
Identical group No.439294 (6 seq.)
>PL171000012
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51354
51280
-
Asn
GTT
[Ensembl]
¡û
>PL171000101
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22245
22319
+
Asn
GTT
[ENA]
¡û
>PL171000134
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4790
4864
+
Asn
GTT
[ENA]
¡û
>WENV170956816
MJUP01252721
[MJUP] soil metagenome; viral particles from soil sample MGM
76
2
-
Asn
GTT
[ENA]
¢þ
>W141805234
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
2487558
2487631
+
Asn
GTT
[ENA]
¡û
>C151081767
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2485403
2485476
+
Asn
GTT
[Ensembl]
¡û
Identical group No.447715 (2 seq.)
>PL171000199
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11383
11456
+
Asn
GTT
[ENA]
¡û
>W1910976661
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
1483958
1484032
+
Asn
GTT
[ENA]
¡û
Identical group No.458620 (1 seq.)
>PL191000011
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
73596
73670
+
Asn
GTT
[ENA]
¡û
Identical group No.463817 (2 seq.)
>PL171000086
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21038
20964
-
Asn
GTT
[ENA]
¡û
>C131005051
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471872
2471946
+
Asn
GTT
[Ensembl]
¡û
Identical group No.469317 (3 seq.)
>W131065819
ANNX01000019
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
29140
29066
-
Asn
GTT
[ENA]
¡û
>PL171000518
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1695
1621
-
Asn
GTT
[ENA]
¡û
>C161002501
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2280034
2280108
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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