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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = GTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.713277 (4 seq.)
>PL171000012
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51354
51280
-
Asn
GTT
[Ensembl]
¡û
>PL171000101
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22245
22319
+
Asn
GTT
[ENA]
¡û
>PL171000134
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4790
4864
+
Asn
GTT
[ENA]
¡û
>WENV170956816
MJUP01252721
[MJUP] soil metagenome; viral particles from soil sample MGM
76
2
-
Asn
GTT
[ENA]
¢þ
Identical group No.735006 (3 seq.)
>WENV171003648
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2981
2907
-
Asn
GTT
[ENA]
¢þ
>PL191000523
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20682
20608
-
Asn
GTT
[ENA]
¡û
>W1911118836
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
19954
20028
+
Asn
GTT
[ENA]
¡û
Identical group No.752478 (2 seq.)
>PL171000086
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
21038
20964
-
Asn
GTT
[ENA]
¡û
>C131005051
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2471872
2471946
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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