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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197297 (2 seq.)
>W1711081266
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22609
22535
-
Leu
TAA
[ENA]
¡û
>PL173000026
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102204
102279
+
Leu
TAA
[ENA]
¡û
Identical group No.198019 (22 seq.)
>W1711711392
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
18075
18150
+
Leu
TAA
[ENA]
¡û
>W1711711455
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
24898
24972
+
Leu
TAA
[ENA]
¡û
>PL171000166
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2960
2887
-
Leu
TAA
[ENA]
¡û
>WENV171003655
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2406
2330
-
Leu
TAA
[ENA]
¢þ
>C181004796
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1809164
1809089
-
Leu
TAA
-
¡û
>C181137725
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437962
4438038
+
Leu
TAA
-
¡û
>W1910596236
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26984
27059
+
Leu
TAA
[ENA]
¡û
>W1910596320
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26985
27060
+
Leu
TAA
[ENA]
¡û
>W1910596401
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26985
27060
+
Leu
TAA
[ENA]
¡û
>W1910596483
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26983
27058
+
Leu
TAA
[ENA]
¡û
>W1910596563
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26976
27051
+
Leu
TAA
[ENA]
¡û
>W1910596634
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25288
25213
-
Leu
TAA
[ENA]
¡û
>W1910596711
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26983
27058
+
Leu
TAA
[ENA]
¡û
>W1910596779
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28165
28240
+
Leu
TAA
[ENA]
¡û
>W1910596855
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26967
27042
+
Leu
TAA
[ENA]
¡û
>W1910596967
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27205
27280
+
Leu
TAA
[ENA]
¡û
>W1910597013
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28888
28963
+
Leu
TAA
[ENA]
¡û
>W1910597138
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26968
27043
+
Leu
TAA
[ENA]
¡û
>W1910597234
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56605
56680
+
Leu
TAA
[ENA]
¡û
>W1511013841
JHEG02000036
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
6796
6872
+
Leu
TAA
[ENA]
¡û
>W1610003544
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30378
30303
-
Leu
TAA
[ENA]
¡û
>W1710004164
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30378
30303
-
Leu
TAA
[ENA]
¡û
Identical group No.231074 (7 seq.)
>PL171000019
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50627
50553
-
Leu
TAA
[Ensembl]
¡û
>PL171000108
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22889
22963
+
Leu
TAA
[ENA]
¡û
>PL171000141
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5517
5591
+
Leu
TAA
[ENA]
¡û
>PL171000523
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1032
958
-
Leu
TAA
[ENA]
¡û
>CL00042
AP003604
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [AP003604]
50628
50550
-
Leu
TAA
[Ensembl]
¡û
>C181078420
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6326027
6326103
+
Leu
TAA
-
¡û
>W1511013853
JHEG02000040
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
43972
43898
-
Leu
TAA
[ENA]
¡û
Identical group No.238860 (7 seq.)
>W131058333
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4840500
4840575
+
Leu
TAA
[ENA]
¡û
>PL171000091
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
19484
19411
-
Leu
TAA
[ENA]
¡û
>W141021314
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19112
19038
-
Leu
TAA
[ENA]
¡û
>W1911218656
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9133
9059
-
Leu
TAA
[ENA]
¡û
>W1511013827
JHEG02000001
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
66837
66763
-
Leu
TAA
[ENA]
¡û
>C161002503
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2280503
2280578
+
Leu
TAA
[Ensembl]
¡û
>C131005056
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2473426
2473499
+
Leu
TAA
[Ensembl]
¡û
Identical group No.251830 (3 seq.)
>PL191000527
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20284
20210
-
Leu
TAA
[ENA]
¡û
>W1910646687
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23694
23620
-
Leu
TAA
[ENA]
¡û
>W1911118840
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20352
20426
+
Leu
TAA
[ENA]
¡û
Identical group No.256232 (1 seq.)
>PL191000017
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74232
74306
+
Leu
TAA
[ENA]
¡û
Identical group No.265342 (1 seq.)
>PL171000205
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11859
11935
+
Leu
TAA
[ENA]
¡û
Identical group No.277953 (1 seq.)
>PL171001314
CP017600
Cyanobacteria
Moorea producens PAL-8-15-08-1 PAL 15AUG08-1 plasmid:unnamed
8026
7951
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK