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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.551686 (1 seq.)
>PL171000127
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
170473
170398
-
Val
TAC
[ENA]
¡û
Identical group No.551757 (3 seq.)
>PL171000022
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50314
50239
-
Val
TAC
[Ensembl]
¡û
>PL171000111
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23204
23279
+
Val
TAC
[ENA]
¡û
>PL171000144
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5830
5905
+
Val
TAC
[ENA]
¡û
Identical group No.620879 (1 seq.)
>PL171000169
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2699
2624
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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