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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485808 (3 seq.)
>PL171000182
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102718
102793
+
Val
TAC
[ENA]
¡û
>W1610003576
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
803
878
+
Val
TAC
[ENA]
¡û
>W1710004196
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
803
878
+
Val
TAC
[ENA]
¡û
Identical group No.524053 (17 seq.)
>PL191000451
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615866
615791
-
Val
TAC
[ENA]
¡û
>PL191000530
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20046
19971
-
Val
TAC
[ENA]
¡û
>W1910596239
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27308
27383
+
Val
TAC
[ENA]
¡û
>W1910596323
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27309
27384
+
Val
TAC
[ENA]
¡û
>W1910596404
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27309
27384
+
Val
TAC
[ENA]
¡û
>W1910596486
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27307
27382
+
Val
TAC
[ENA]
¡û
>W1910596566
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27300
27375
+
Val
TAC
[ENA]
¡û
>W1910596637
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24964
24889
-
Val
TAC
[ENA]
¡û
>W1910596714
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27307
27382
+
Val
TAC
[ENA]
¡û
>W1910596782
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28489
28564
+
Val
TAC
[ENA]
¡û
>W1910596858
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27291
27366
+
Val
TAC
[ENA]
¡û
>W1910596970
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27529
27604
+
Val
TAC
[ENA]
¡û
>W1910597016
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29212
29287
+
Val
TAC
[ENA]
¡û
>W1910597141
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27292
27367
+
Val
TAC
[ENA]
¡û
>W1910597237
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56929
57004
+
Val
TAC
[ENA]
¡û
>W1910646690
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23455
23380
-
Val
TAC
[ENA]
¡û
>W1911118843
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20590
20665
+
Val
TAC
[ENA]
¡û
Identical group No.696027 (2 seq.)
>PL193000008
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74552
74626
+
Val
TAC
[ENA]
¡û
>C183000142
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1808790
1808716
-
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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