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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303222 (6 seq.)
>W131058330
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4840153
4840227
+
Leu
TAG
[ENA]
¡û
>W1711711452
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
24493
24567
+
Leu
TAG
[ENA]
¡û
>PL171000203
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11703
11777
+
Leu
TAG
[ENA]
¡û
>PL191000392
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2496
2422
-
Leu
TAG
[ENA]
¡û
>W1610003542
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30646
30571
-
Leu
TAG
[ENA]
¡û
>W1710004162
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30646
30571
-
Leu
TAG
[ENA]
¡û
Identical group No.308324 (2 seq.)
>PL171000520
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1266
1192
-
Leu
TAG
[ENA]
¡û
>WENV180015455
FQKF010701788
[FQKF] soil metagenome; Soil
247
173
-
Leu
TAG
[ENA]
¢þ
Identical group No.336308 (16 seq.)
>PL171000105
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22646
22721
+
Leu
TAG
[ENA]
¡û
>W141021311
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19427
19353
-
Leu
TAG
[ENA]
¡û
>W1910596232
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26647
26721
+
Leu
TAG
[ENA]
¡û
>W1910596316
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26648
26722
+
Leu
TAG
[ENA]
¡û
>W1910596397
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26648
26722
+
Leu
TAG
[ENA]
¡û
>W1910596479
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26646
26720
+
Leu
TAG
[ENA]
¡û
>W1910596559
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26639
26713
+
Leu
TAG
[ENA]
¡û
>W1910596630
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25625
25551
-
Leu
TAG
[ENA]
¡û
>W1910596707
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26646
26720
+
Leu
TAG
[ENA]
¡û
>W1910596775
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27828
27902
+
Leu
TAG
[ENA]
¡û
>W1910596851
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26630
26704
+
Leu
TAG
[ENA]
¡û
>W1910596963
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26868
26942
+
Leu
TAG
[ENA]
¡û
>W1910597009
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28551
28625
+
Leu
TAG
[ENA]
¡û
>W1910597134
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26631
26705
+
Leu
TAG
[ENA]
¡û
>W1910597230
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56268
56342
+
Leu
TAG
[ENA]
¡û
>W1911218653
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9448
9374
-
Leu
TAG
[ENA]
¡û
Identical group No.416850 (2 seq.)
>PL171000089
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
19737
19663
-
Leu
TAG
[ENA]
¡û
>C131005054
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2473173
2473247
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK