This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TCC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.673334 (5 seq.)
>PL171000126
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
170646
170574
-
Gly
TCC
[ENA]
¡û
>PL171000181
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102523
102595
+
Gly
TCC
[ENA]
¡û
>W1610003575
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
608
680
+
Gly
TCC
[ENA]
¡û
>C131010331
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5193449
5193377
-
Gly
TCC
[Ensembl]
¡û
>W1710004195
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
608
680
+
Gly
TCC
[ENA]
¡û
Identical group No.786963 (34 seq.)
>W131036267
ALVJ01000038
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
611716
611646
-
Gly
TCC
[ENA]
¡û
>W1711666651
MRCD01000129
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
10044
9974
-
Gly
TCC
[ENA]
¡û
>PL171000188
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
1646731
1646801
+
Gly
TCC
[ENA]
¡û
>C025177
BA000022
Cyanobacteriota
Synechocystis sp. PCC 6803 [BA000022]
1704238
1704308
+
Gly
TCC
[Ensembl]
¡û
>W141051304
AMZV01000023
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
212096
212166
+
Gly
TCC
[ENA]
¡û
>W08008930
ABLR01000004
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
302408
302478
+
Gly
TCC
[ENA]
¡û
>W08011490
ABVI01000002
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
178479
178409
-
Gly
TCC
[ENA]
¡û
>W141260252
CBZS010000058
Cyanobacteriota
Richelia intracellularis [CBZS]
17234
17306
+
Gly
TCC
[ENA]
¡û
>C181004899
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
5672267
5672197
-
Gly
TCC
-
¡û
>C181004936
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
9161125
9161055
-
Gly
TCC
-
¡û
>C181004987
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
5589186
5589116
-
Gly
TCC
-
¡û
>C181160835
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
1703055
1703125
+
Gly
TCC
-
¡û
>C191001483
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
389194
389124
-
Gly
TCC
-
¡û
>W141805243
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
2900530
2900600
+
Gly
TCC
[ENA]
¡û
>W1910018053
BDQK01000003
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
112739
112809
+
Gly
TCC
[ENA]
¡û
>W1910018121
BDQL01000090
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
23845
23915
+
Gly
TCC
[ENA]
¡û
>C09103612
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
816869
816939
+
Gly
TCC
[Ensembl]
¡û
>W1910502545
FYBH01000394
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
15840
15770
-
Gly
TCC
[ENA]
¡û
>W1911278525
NTFS01000045
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
4717
4647
-
Gly
TCC
[ENA]
¡û
>W1810069174
PEBC01000011
Cyanobacteriota
Cyanobacterium aponinum B-1201 [PEBC]
19710
19640
-
Gly
TCC
[ENA]
¡û
>C151000970
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
457370
457300
-
Gly
TCC
[Ensembl]
¡û
>C151027468
CP007542
Cyanobacteriota
Synechocystis sp. PCC 6714 [CP007542]
1983915
1983845
-
Gly
TCC
[Ensembl]
¡û
>C151081776
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2892984
2893054
+
Gly
TCC
[Ensembl]
¡û
>C10104704
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
816667
816737
+
Gly
TCC
[Ensembl]
¡û
>C11122288
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
1703055
1703125
+
Gly
TCC
[Ensembl]
¡û
>C121000598
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
1703157
1703227
+
Gly
TCC
[Ensembl]
¡û
>C121000637
AP012277
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-N [AP012277]
1703254
1703324
+
Gly
TCC
[Ensembl]
¡û
>C121000676
AP012278
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-P [AP012278]
1703266
1703336
+
Gly
TCC
[Ensembl]
¡û
>C161046047
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
1703311
1703381
+
Gly
TCC
-
¡û
>C131000629
AP012495
Bacillota
Bacillus subtilis [AP012495]
3078245
3078315
+
Gly
TCC
[Ensembl]
¡û
>C131002593
CP003265
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP003265]
1702707
1702777
+
Gly
TCC
-
¡û
>C131004713
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
6272469
6272399
-
Gly
TCC
[Ensembl]
¡û
>C131010509
CP003947
Cyanobacteriota
Cyanobacterium aponinum PCC 10605 [CP003947]
933385
933315
-
Gly
TCC
[Ensembl]
¡û
>W1710005660
ALVQ01000011
Cyanobacteriota
Spirulina major PCC 6313 [ALVQ]
2211023
2210953
-
Gly
TCC
[ENA]
¡û
Identical group No.788893 (5 seq.)
>W1711711313
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
89942
89871
-
Gly
TCC
[ENA]
¡û
>W1711711394
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
18294
18365
+
Gly
TCC
[ENA]
¡û
>W1711711457
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
25138
25211
+
Gly
TCC
[ENA]
¡û
>PL191000018
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74471
74542
+
Gly
TCC
[ENA]
¡û
>C181004798
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1808945
1808872
-
Gly
TCC
-
¡û
Identical group No.798662 (15 seq.)
>PL191000529
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20122
20052
-
Gly
TCC
[ENA]
¡û
>W1910596238
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27232
27302
+
Gly
TCC
[ENA]
¡û
>W1910596322
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W1910596403
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W1910596485
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W1910596565
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27224
27294
+
Gly
TCC
[ENA]
¡û
>W1910596636
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25040
24970
-
Gly
TCC
[ENA]
¡û
>W1910596713
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W1910596781
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28413
28483
+
Gly
TCC
[ENA]
¡û
>W1910596857
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27215
27285
+
Gly
TCC
[ENA]
¡û
>W1910596969
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27453
27523
+
Gly
TCC
[ENA]
¡û
>W1910597015
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29136
29206
+
Gly
TCC
[ENA]
¡û
>W1910597140
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27216
27286
+
Gly
TCC
[ENA]
¡û
>W1910597236
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56853
56923
+
Gly
TCC
[ENA]
¡û
>W1911118842
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20514
20584
+
Gly
TCC
[ENA]
¡û
Identical group No.806334 (7 seq.)
>W1711335772
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496613
496684
+
Gly
TCC
[ENA]
¡û
>PL171000021
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50390
50319
-
Gly
TCC
[Ensembl]
¡û
>PL171000110
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23128
23199
+
Gly
TCC
[ENA]
¡û
>PL171000143
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5754
5825
+
Gly
TCC
[ENA]
¡û
>C191001261
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4728133
4728204
+
Gly
TCC
-
¡û
>C161038895
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3705220
3705291
+
Gly
TCC
[Ensembl]
¡û
>W1611066479
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496613
496684
+
Gly
TCC
[ENA]
¡û
Identical group No.826328 (1 seq.)
>PL171000168
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2775
2705
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK