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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.413448 (5 seq.)
>PL171000126
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
170646
170574
-
Gly
TCC
[ENA]
¡û
>PL171000181
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102523
102595
+
Gly
TCC
[ENA]
¡û
>W1610003575
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
608
680
+
Gly
TCC
[ENA]
¡û
>C131010331
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5193449
5193377
-
Gly
TCC
[Ensembl]
¡û
>W1710004195
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
608
680
+
Gly
TCC
[ENA]
¡û
Identical group No.482895 (64 seq.)
>W131036267
ALVJ01000038
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
611716
611646
-
Gly
TCC
[ENA]
¡û
>W131063379
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1658991
1659061
+
Gly
TCC
[ENA]
¡û
>W131087168
AOCI01000072
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
15626
15556
-
Gly
TCC
[ENA]
¡û
>W131203777
ASZQ01000255
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
19800
19730
-
Gly
TCC
[ENA]
¡û
>W1711377915
MDZH01000371
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
30845
30775
-
Gly
TCC
[ENA]
¡û
>W1711603019
MOLN01000018
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
20293
20223
-
Gly
TCC
[ENA]
¡û
>W1711772038
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
93747
93817
+
Gly
TCC
[ENA]
¡û
>PL171000188
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
1646731
1646801
+
Gly
TCC
[ENA]
¡û
>C171016635
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2550459
2550529
+
Gly
TCC
-
¡û
>C171112078
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3198712
3198642
-
Gly
TCC
-
¡û
>WENV180111123
OAPN01031550
[OAPN] marine metagenome; 2011
157
87
-
Gly
TCC
[ENA]
¢þ
>W141051304
AMZV01000023
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
212096
212166
+
Gly
TCC
[ENA]
¡û
>W141065585
AQPY01001032
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
905
975
+
Gly
TCC
[ENA]
¡û
>W08008930
ABLR01000004
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
302408
302478
+
Gly
TCC
[ENA]
¡û
>W08011490
ABVI01000002
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
178479
178409
-
Gly
TCC
[ENA]
¡û
>W141242383
CAIH01000303
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
924
994
+
Gly
TCC
[ENA]
¡û
>W141242417
CAII01000535
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
3103
3173
+
Gly
TCC
[ENA]
¡û
>W141242469
CAIJ01000690
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
652
582
-
Gly
TCC
[ENA]
¡û
>W141242500
CAIK01000380
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
936
1006
+
Gly
TCC
[ENA]
¡û
>W141242525
CAIL01000114
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
1822
1892
+
Gly
TCC
[ENA]
¡û
>W141242550
CAIM01000079
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
1084
1154
+
Gly
TCC
[ENA]
¡û
>W141242615
CAIN01000273
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
15040
14970
-
Gly
TCC
[ENA]
¡û
>W141242632
CAIO01000115
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
5522
5452
-
Gly
TCC
[ENA]
¡û
>W141242676
CAIP01000096
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
15400
15470
+
Gly
TCC
[ENA]
¡û
>W141242731
CAIQ01000320
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
3960
4030
+
Gly
TCC
[ENA]
¡û
>W141242877
CAIY01000044
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
285818
285748
-
Gly
TCC
[ENA]
¡û
>C08006365
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4990912
4990842
-
Gly
TCC
[Ensembl]
¡û
>WENV183748632
PPFU01062246
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1127
1057
-
Gly
TCC
[ENA]
¢þ
>WENV183750503
PPFU01313560
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1085
1015
-
Gly
TCC
[ENA]
¢þ
>WENV170680736
LFEF01015971
[LFEF] freshwater metagenome; waterbloom
25880
25950
+
Gly
TCC
[ENA]
¢þ
>C181004987
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
5589186
5589116
-
Gly
TCC
-
¡û
>C181046175
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4367079
4367149
+
Gly
TCC
-
¡û
>C181160835
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
1703055
1703125
+
Gly
TCC
-
¡û
>C191001483
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
389194
389124
-
Gly
TCC
-
¡û
>C191007277
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2866327
2866257
-
Gly
TCC
-
¡û
>W1910018053
BDQK01000003
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
112739
112809
+
Gly
TCC
[ENA]
¡û
>W1910018121
BDQL01000090
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
23845
23915
+
Gly
TCC
[ENA]
¡û
>W1910020342
BDSG01000022
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
30985
30915
-
Gly
TCC
[ENA]
¡û
>W1910020386
BDSM01000012
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
2091
2161
+
Gly
TCC
[ENA]
¡û
>W1910038646
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
354152
354082
-
Gly
TCC
[ENA]
¡û
>W1910038714
BEIV01000076
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
15537
15607
+
Gly
TCC
[ENA]
¡û
>W1910067362
BEYQ01000007
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
203639
203569
-
Gly
TCC
[ENA]
¡û
>W1910067400
BFAC01000006
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
18151
18081
-
Gly
TCC
[ENA]
¡û
>W1910142343
BIFY01000086
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
4690
4620
-
Gly
TCC
[ENA]
¡û
>C09103612
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
816869
816939
+
Gly
TCC
[Ensembl]
¡û
>W1910665571
MCIH01000083
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
13000
12930
-
Gly
TCC
[ENA]
¡û
>W1910768692
MOLZ01000240
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
3734
3804
+
Gly
TCC
[ENA]
¡û
>W1911278525
NTFS01000045
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
4717
4647
-
Gly
TCC
[ENA]
¡û
>C151000970
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
457370
457300
-
Gly
TCC
[Ensembl]
¡û
>C151079366
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2553245
2553315
+
Gly
TCC
[Ensembl]
¡û
>C151080718
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2828914
2828844
-
Gly
TCC
-
¡û
>C151081776
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2892984
2893054
+
Gly
TCC
[Ensembl]
¡û
>W1510013627
BBPA01000035
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
92600
92530
-
Gly
TCC
[ENA]
¡û
>C11122288
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
1703055
1703125
+
Gly
TCC
[Ensembl]
¡û
>C121000598
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
1703157
1703227
+
Gly
TCC
[Ensembl]
¡û
>C161046047
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
1703311
1703381
+
Gly
TCC
-
¡û
>C131004713
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
6272469
6272399
-
Gly
TCC
[Ensembl]
¡û
>W1610550811
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1255109
1255039
-
Gly
TCC
[ENA]
¡û
>W1710004749
AJHB01001655
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
649
579
-
Gly
TCC
[ENA]
¡û
>W1710005099
AJUS01001735
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
651
581
-
Gly
TCC
[ENA]
¡û
>W1710005136
AJUT01001634
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
624
554
-
Gly
TCC
[ENA]
¡û
>W1710005172
AJUU01001617
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
656
586
-
Gly
TCC
[ENA]
¡û
>W1710005660
ALVQ01000011
Cyanobacteriota
Spirulina major PCC 6313 [ALVQ]
2211023
2210953
-
Gly
TCC
[ENA]
¡û
>W1710660688
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1255109
1255039
-
Gly
TCC
[ENA]
¡û
Identical group No.487296 (16 seq.)
>W131058334
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4840764
4840835
+
Gly
TCC
[ENA]
¡û
>W1711335772
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496613
496684
+
Gly
TCC
[ENA]
¡û
>W1711711313
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
89942
89871
-
Gly
TCC
[ENA]
¡û
>W1711711394
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
18294
18365
+
Gly
TCC
[ENA]
¡û
>W1711711457
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
25138
25211
+
Gly
TCC
[ENA]
¡û
>PL171000021
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50390
50319
-
Gly
TCC
[Ensembl]
¡û
>PL171000110
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23128
23199
+
Gly
TCC
[ENA]
¡û
>PL171000143
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5754
5825
+
Gly
TCC
[ENA]
¡û
>PL191000018
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74471
74542
+
Gly
TCC
[ENA]
¡û
>C181004798
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1808945
1808872
-
Gly
TCC
-
¡û
>C191001261
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4728133
4728204
+
Gly
TCC
-
¡û
>C161038895
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3705220
3705291
+
Gly
TCC
[Ensembl]
¡û
>W1610003546
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30169
30096
-
Gly
TCC
[ENA]
¡û
>C131004186
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3485523
3485453
-
Gly
TCC
[Ensembl]
¡û
>W1611066479
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496613
496684
+
Gly
TCC
[ENA]
¡û
>W1710004166
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
30169
30096
-
Gly
TCC
[ENA]
¡û
Identical group No.494028 (15 seq.)
>PL191000529
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20122
20052
-
Gly
TCC
[ENA]
¡û
>W1910596238
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27232
27302
+
Gly
TCC
[ENA]
¡û
>W1910596322
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W1910596403
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27233
27303
+
Gly
TCC
[ENA]
¡û
>W1910596485
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W1910596565
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27224
27294
+
Gly
TCC
[ENA]
¡û
>W1910596636
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25040
24970
-
Gly
TCC
[ENA]
¡û
>W1910596713
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27231
27301
+
Gly
TCC
[ENA]
¡û
>W1910596781
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28413
28483
+
Gly
TCC
[ENA]
¡û
>W1910596857
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27215
27285
+
Gly
TCC
[ENA]
¡û
>W1910596969
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27453
27523
+
Gly
TCC
[ENA]
¡û
>W1910597015
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29136
29206
+
Gly
TCC
[ENA]
¡û
>W1910597140
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27216
27286
+
Gly
TCC
[ENA]
¡û
>W1910597236
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56853
56923
+
Gly
TCC
[ENA]
¡û
>W1911118842
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20514
20584
+
Gly
TCC
[ENA]
¡û
Identical group No.511578 (1 seq.)
>PL171000168
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2775
2705
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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