This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218374 (14 seq.)
>PL191000452
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615784
615710
-
Arg
TCT
[ENA]
¡û
>W1910596240
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27390
27464
+
Arg
TCT
[ENA]
¡û
>W1910596324
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27391
27465
+
Arg
TCT
[ENA]
¡û
>W1910596405
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27391
27465
+
Arg
TCT
[ENA]
¡û
>W1910596487
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27389
27463
+
Arg
TCT
[ENA]
¡û
>W1910596567
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27382
27456
+
Arg
TCT
[ENA]
¡û
>W1910596638
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24882
24808
-
Arg
TCT
[ENA]
¡û
>W1910596715
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27389
27463
+
Arg
TCT
[ENA]
¡û
>W1910596783
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28571
28645
+
Arg
TCT
[ENA]
¡û
>W1910596859
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27373
27447
+
Arg
TCT
[ENA]
¡û
>W1910596971
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27611
27685
+
Arg
TCT
[ENA]
¡û
>W1910597017
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29294
29368
+
Arg
TCT
[ENA]
¡û
>W1910597142
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27374
27448
+
Arg
TCT
[ENA]
¡û
>W1910597238
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
57011
57085
+
Arg
TCT
[ENA]
¡û
Identical group No.232257 (1 seq.)
>PL171000128
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
170391
170315
-
Arg
TCT
[ENA]
¡û
Identical group No.334752 (6 seq.)
>W1711081270
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22213
22140
-
Arg
TCT
[ENA]
¡û
>WENV171003658
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2010
1937
-
Arg
TCT
[ENA]
¢þ
>PL191000531
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19964
19891
-
Arg
TCT
[ENA]
¡û
>C181137728
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438277
4438350
+
Arg
TCT
-
¡û
>W1910646691
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23373
23300
-
Arg
TCT
[ENA]
¡û
>W1911118844
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20672
20745
+
Arg
TCT
[ENA]
¡û
Identical group No.370758 (1 seq.)
>PL191000019
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74633
74706
+
Arg
TCT
[ENA]
¡û
Identical group No.381252 (1 seq.)
>PL171000170
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2617
2542
-
Arg
TCT
[ENA]
¡û
Identical group No.412123 (10 seq.)
>W131058335
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4841018
4841092
+
Arg
TCT
[ENA]
¡û
>W131065829
ANNX01000019
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
27550
27476
-
Arg
TCT
[ENA]
¡û
>PL171000023
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50232
50160
-
Arg
TCT
[Ensembl]
¡û
>PL171000112
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23286
23358
+
Arg
TCT
[ENA]
¡û
>PL171000145
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5912
5984
+
Arg
TCT
[ENA]
¡û
>PL191000394
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2062
1988
-
Arg
TCT
[ENA]
¡û
>C181004800
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1808709
1808636
-
Arg
TCT
-
¡û
>W1911278522
NTFS01000035
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
4792
4718
-
Arg
TCT
[ENA]
¡û
>W1511013831
JHEG02000001
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
66414
66340
-
Arg
TCT
[ENA]
¡û
>C131010333
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5193171
5193099
-
Arg
TCT
[Ensembl]
¡û
Identical group No.413954 (2 seq.)
>W1711711459
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
25374
25448
+
Arg
TCT
[ENA]
¡û
>PL171000525
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
595
521
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK