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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90127 (2 seq.)
>PL171000187
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
861019
861105
+
Ser
TGA
[ENA]
¡û
>C181004986
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
6374898
6374812
-
Ser
TGA
-
¡û
Identical group No.167547 (2 seq.)
>PL191000397
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
1822
1738
-
Ser
TGA
[ENA]
¡û
>W132000042
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4841258
4841342
+
Ser
TGA
[ENA]
¡û
Identical group No.171600 (2 seq.)
>PL191000454
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615538
615454
-
Ser
TGA
[ENA]
¡û
>PL191000533
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19724
19640
-
Ser
TGA
[ENA]
¡û
Identical group No.175435 (1 seq.)
>PL172000004
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
12306
12390
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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