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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.58560 (2 seq.)
>PL171000187
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
861019
861105
+
Ser
TGA
[ENA]
¡û
>C181004986
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
6374898
6374812
-
Ser
TGA
-
¡û
Identical group No.106380 (18 seq.)
>PL191000454
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615538
615454
-
Ser
TGA
[ENA]
¡û
>PL191000533
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19724
19640
-
Ser
TGA
[ENA]
¡û
>C181137730
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438517
4438599
+
Ser
TGA
-
¡û
>W1910596242
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27636
27720
+
Ser
TGA
[ENA]
¡û
>W1910596326
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27637
27721
+
Ser
TGA
[ENA]
¡û
>W1910596407
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27637
27721
+
Ser
TGA
[ENA]
¡û
>W1910596489
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27635
27719
+
Ser
TGA
[ENA]
¡û
>W1910596569
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27628
27712
+
Ser
TGA
[ENA]
¡û
>W1910596640
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24636
24552
-
Ser
TGA
[ENA]
¡û
>W1910596717
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27635
27719
+
Ser
TGA
[ENA]
¡û
>W1910596785
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28817
28901
+
Ser
TGA
[ENA]
¡û
>W1910596861
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27619
27703
+
Ser
TGA
[ENA]
¡û
>W1910596973
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27857
27941
+
Ser
TGA
[ENA]
¡û
>W1910597019
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29540
29624
+
Ser
TGA
[ENA]
¡û
>W1910597144
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27620
27704
+
Ser
TGA
[ENA]
¡û
>W1910597240
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
57257
57341
+
Ser
TGA
[ENA]
¡û
>W1910646694
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23133
23049
-
Ser
TGA
[ENA]
¡û
>W1911118847
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20912
20996
+
Ser
TGA
[ENA]
¡û
Identical group No.109662 (3 seq.)
>PL172000004
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
12306
12390
+
Ser
TGA
[ENA]
¡û
>PL191000397
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
1822
1738
-
Ser
TGA
[ENA]
¡û
>W132000042
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4841258
4841342
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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