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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TGC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298725 (2 seq.)
>PL191000020
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74712
74786
+
Ala
TGC
[ENA]
¡û
>W1911278523
NTFS01000035
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
4714
4640
-
Ala
TGC
[ENA]
¡û
Identical group No.302039 (3 seq.)
>PL171000183
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102904
102978
+
Ala
TGC
[ENA]
¡û
>W1610003577
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
989
1063
+
Ala
TGC
[ENA]
¡û
>W1710004197
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
989
1063
+
Ala
TGC
[ENA]
¡û
Identical group No.347778 (5 seq.)
>WENV171003659
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
1932
1858
-
Ala
TGC
[ENA]
¢þ
>PL191000532
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19886
19812
-
Ala
TGC
[ENA]
¡û
>C181137729
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438355
4438429
+
Ala
TGC
-
¡û
>W1910646692
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23295
23221
-
Ala
TGC
[ENA]
¡û
>W1911118845
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20750
20824
+
Ala
TGC
[ENA]
¡û
Identical group No.361565 (4 seq.)
>PL171000024
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50154
50080
-
Ala
TGC
[Ensembl]
¡û
>PL171000113
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23363
23438
+
Ala
TGC
[ENA]
¡û
>PL171000146
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5990
6064
+
Ala
TGC
[ENA]
¡û
>W1511013854
JHEG02000040
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
43500
43426
-
Ala
TGC
[ENA]
¡û
Identical group No.524054 (18 seq.)
>W1711081271
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22135
22062
-
Ala
TGC
[ENA]
¡û
>PL171000206
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
12144
12217
+
Ala
TGC
[ENA]
¡û
>W141038488
ALVX01000007
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
55806
55733
-
Ala
TGC
[ENA]
¡û
>W141038533
ALVX01000037
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
68792
68719
-
Ala
TGC
[ENA]
¡û
>PL191000453
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615705
615632
-
Ala
TGC
[ENA]
¡û
>W1910596241
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27469
27542
+
Ala
TGC
[ENA]
¡û
>W1910596325
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27470
27543
+
Ala
TGC
[ENA]
¡û
>W1910596406
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27470
27543
+
Ala
TGC
[ENA]
¡û
>W1910596488
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27468
27541
+
Ala
TGC
[ENA]
¡û
>W1910596568
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27461
27534
+
Ala
TGC
[ENA]
¡û
>W1910596639
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24803
24730
-
Ala
TGC
[ENA]
¡û
>W1910596716
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27468
27541
+
Ala
TGC
[ENA]
¡û
>W1910596784
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28650
28723
+
Ala
TGC
[ENA]
¡û
>W1910596860
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27452
27525
+
Ala
TGC
[ENA]
¡û
>W1910596972
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27690
27763
+
Ala
TGC
[ENA]
¡û
>W1910597018
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29373
29446
+
Ala
TGC
[ENA]
¡û
>W1910597143
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27453
27526
+
Ala
TGC
[ENA]
¡û
>W1910597239
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
57090
57163
+
Ala
TGC
[ENA]
¡û
Identical group No.549279 (3 seq.)
>PL171000526
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
517
444
-
Ala
TGC
[ENA]
¡û
>C181078421
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6326216
6326289
+
Ala
TGC
-
¡û
>C161002504
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2280864
2280937
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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