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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197275 (5 seq.)
>PL171000109
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23046
23119
+
Thr
TGT
[ENA]
¡û
>PL171000180
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102441
102514
+
Thr
TGT
[ENA]
¡û
>W1610003574
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
526
599
+
Thr
TGT
[ENA]
¡û
>C131010330
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
5193531
5193458
-
Thr
TGT
[Ensembl]
¡û
>W1710004194
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
526
599
+
Thr
TGT
[ENA]
¡û
Identical group No.268710 (1 seq.)
>PL171000524
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
856
780
-
Thr
TGT
[ENA]
¡û
Identical group No.318331 (17 seq.)
>WENV171003378
NNBT01007710
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
12289
12364
+
Thr
TGT
[ENA]
¢þ
>PL191000528
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20200
20128
-
Thr
TGT
[ENA]
¡û
>W1910596237
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27154
27226
+
Thr
TGT
[ENA]
¡û
>W1910596321
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W1910596402
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W1910596484
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W1910596564
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27146
27218
+
Thr
TGT
[ENA]
¡û
>W1910596635
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25118
25046
-
Thr
TGT
[ENA]
¡û
>W1910596712
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W1910596780
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28335
28407
+
Thr
TGT
[ENA]
¡û
>W1910596856
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27137
27209
+
Thr
TGT
[ENA]
¡û
>W1910596968
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27375
27447
+
Thr
TGT
[ENA]
¡û
>W1910597014
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29058
29130
+
Thr
TGT
[ENA]
¡û
>W1910597139
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27138
27210
+
Thr
TGT
[ENA]
¡û
>W1910597235
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56775
56847
+
Thr
TGT
[ENA]
¡û
>W1911118841
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20436
20508
+
Thr
TGT
[ENA]
¡û
>C133000147
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
3384049
3383974
-
Thr
TGT
[Ensembl]
¡û
Identical group No.411239 (9 seq.)
>W131036228
ALVJ01000018
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
409065
408994
-
Thr
TGT
[ENA]
¡û
>W1711666650
MRCD01000122
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
4416
4487
+
Thr
TGT
[ENA]
¡û
>PL171000191
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
2047295
2047224
-
Thr
TGT
[ENA]
¡û
>C181004963
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
1935628
1935557
-
Thr
TGT
-
¡û
>C181004980
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
5188622
5188693
+
Thr
TGT
-
¡û
>W141805264
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
3252574
3252503
-
Thr
TGT
[ENA]
¡û
>W1911278550
NTFS01000407
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
2178
2107
-
Thr
TGT
[ENA]
¡û
>C151081797
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
3245028
3244957
-
Thr
TGT
[Ensembl]
¡û
>C131004708
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
6009642
6009713
+
Thr
TGT
[Ensembl]
¡û
Identical group No.439566 (2 seq.)
>PL171000020
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50470
50399
-
Thr
TGT
[Ensembl]
¡û
>PL171000142
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5674
5745
+
Thr
TGT
[ENA]
¡û
Identical group No.466484 (1 seq.)
>PL171000167
AP018231
Cyanobacteria
Calothrix parasitica NIES-267 plasmid:plasmid4
2852
2778
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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