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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TTG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254690 (2 seq.)
>PL171000014
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
51193
51117
-
Gln
TTG
[Ensembl]
¡û
>PL171000136
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
4951
5027
+
Gln
TTG
[ENA]
¡û
Identical group No.336306 (19 seq.)
>W1711081260
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23676
23600
-
Gln
TTG
[ENA]
¡û
>W141021308
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19665
19591
-
Gln
TTG
[ENA]
¡û
>WENV171003649
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2901
2825
-
Gln
TTG
[ENA]
¢þ
>PL191000012
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
73676
73751
+
Gln
TTG
[ENA]
¡û
>C181137724
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437859
4437933
+
Gln
TTG
-
¡û
>W1910596229
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26402
26477
+
Gln
TTG
[ENA]
¡û
>W1910596313
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W1910596394
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W1910596476
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W1910596556
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26394
26469
+
Gln
TTG
[ENA]
¡û
>W1910596627
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25870
25795
-
Gln
TTG
[ENA]
¡û
>W1910596704
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W1910596772
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27583
27658
+
Gln
TTG
[ENA]
¡û
>W1910596848
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26385
26460
+
Gln
TTG
[ENA]
¡û
>W1910596960
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26623
26698
+
Gln
TTG
[ENA]
¡û
>W1910597006
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28306
28381
+
Gln
TTG
[ENA]
¡û
>W1910597131
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26386
26461
+
Gln
TTG
[ENA]
¡û
>W1910597227
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56023
56098
+
Gln
TTG
[ENA]
¡û
>W1911218650
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9686
9612
-
Gln
TTG
[ENA]
¡û
Identical group No.370700 (1 seq.)
>PL191000389
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2734
2659
-
Gln
TTG
[ENA]
¡û
Identical group No.416849 (2 seq.)
>PL171000087
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
20040
19965
-
Gln
TTG
[ENA]
¡û
>C131005052
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2472870
2472945
+
Gln
TTG
[Ensembl]
¡û
Identical group No.429465 (2 seq.)
>PL171000102
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22409
22483
+
Gln
TTG
[ENA]
¡û
>C161002502
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2280217
2280293
+
Gln
TTG
[Ensembl]
¡û
Identical group No.485806 (3 seq.)
>PL171000177
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100491
100565
+
Gln
TTG
[ENA]
¡û
>W1610003571
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2044
2118
+
Gln
TTG
[ENA]
¡û
>W1710004191
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2044
2118
+
Gln
TTG
[ENA]
¡û
Identical group No.551684 (1 seq.)
>PL171000123
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171237
171163
-
Gln
TTG
[ENA]
¡û
Identical group No.592212 (3 seq.)
>PL191000524
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20520
20446
-
Gln
TTG
[ENA]
¡û
>W1910646684
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24011
23937
-
Gln
TTG
[ENA]
¡û
>W1911118837
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20116
20190
+
Gln
TTG
[ENA]
¡û
Identical group No.628519 (1 seq.)
>PL171000519
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1533
1458
-
Gln
TTG
[ENA]
¡û
Identical group No.670186 (5 seq.)
>W131036234
ALVJ01000022
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
271805
271876
+
Gln
TTG
[ENA]
¡û
>W1711666648
MRCD01000103
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
9721
9650
-
Gln
TTG
[ENA]
¡û
>PL171000192
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
2029719
2029648
-
Gln
TTG
[ENA]
¡û
>C181004981
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
5206198
5206269
+
Gln
TTG
-
¡û
>C131004725
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
2550507
2550435
-
Gln
TTG
[Ensembl]
¡û
Identical group No.671303 (2 seq.)
>PL171000200
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11464
11538
+
Gln
TTG
[ENA]
¡û
>W1911278516
NTFS01000035
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
5353
5281
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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