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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TTT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303844 (11 seq.)
>W1711081264
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23353
23278
-
Lys
TTT
[ENA]
¡û
>PL171000179
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100649
100725
+
Lys
TTT
[ENA]
¡û
>PL171000204
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11783
11858
+
Lys
TTT
[ENA]
¡û
>W141021312
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19266
19193
-
Lys
TTT
[ENA]
¡û
>W141038484
ALVX01000007
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
56388
56313
-
Lys
TTT
[ENA]
¡û
>PL191000526
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20361
20287
-
Lys
TTT
[ENA]
¡û
>W1910646686
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23852
23778
-
Lys
TTT
[ENA]
¡û
>W1911118839
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20275
20349
+
Lys
TTT
[ENA]
¡û
>W1911218654
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9287
9214
-
Lys
TTT
[ENA]
¡û
>W1610003573
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2202
2278
+
Lys
TTT
[ENA]
¡û
>W1710004193
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2202
2278
+
Lys
TTT
[ENA]
¡û
Identical group No.304665 (5 seq.)
>W1711711311
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
91265
91191
-
Lys
TTT
[ENA]
¡û
>W1711711454
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
24706
24780
+
Lys
TTT
[ENA]
¡û
>PL171000018
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50709
50634
-
Lys
TTT
[Ensembl]
¡û
>PL171000140
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5435
5510
+
Lys
TTT
[ENA]
¡û
>C181078419
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6325946
6326021
+
Lys
TTT
-
¡û
Identical group No.416097 (5 seq.)
>W1711711390
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
17913
17987
+
Lys
TTT
[ENA]
¡û
>PL171000521
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1185
1111
-
Lys
TTT
[ENA]
¡û
>WENV180015456
FQKF010701788
[FQKF] soil metagenome; Soil
166
93
-
Lys
TTT
[ENA]
¢þ
>C181004794
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1809325
1809251
-
Lys
TTT
-
¡û
>W1511013826
JHEG02000001
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
66918
66844
-
Lys
TTT
[ENA]
¡û
Identical group No.419485 (29 seq.)
>W1711509548
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
494221
494150
-
Lys
TTT
[ENA]
¡û
>W1711509602
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
535149
535078
-
Lys
TTT
[ENA]
¡û
>PL171000194
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
35414
35343
-
Lys
TTT
[ENA]
¡û
>W141240131
CAFN01000246
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
2881
2810
-
Lys
TTT
[ENA]
¡û
>WENV170022254
BCQK01002935
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1154
1080
-
Lys
TTT
[ENA]
¢þ
>WENV170024451
BCQL01062593
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
48
121
+
Lys
TTT
[ENA]
¢þ
>WENV170025542
BCQL01354634
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
207
133
-
Lys
TTT
[ENA]
¢þ
>WENV170025686
BCQL01369428
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
71
-1
-
Lys
TTT
[ENA]
¢þ
>CHL1810014767
KM462869
Viridiplantae
Ettlia pseudoalveolaris (KM462869)
3511
3582
+
Lys
TTT
[ENA]
¡û
>CHL1810028000
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
173688
173759
+
Lys
TTT
[ENA]
¡û
>CHL1810050203
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
33643
33715
+
Lys
TTT
[ENA]
¡û
>CHL1810050305
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
33154
33226
+
Lys
TTT
[ENA]
¡û
>CHL1810050353
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
32951
33023
+
Lys
TTT
[ENA]
¡û
>CHL1810050480
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
35424
35495
+
Lys
TTT
[ENA]
¡û
>CHL1810050506
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
34332
34403
+
Lys
TTT
[ENA]
¡û
>CHL1810050531
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
33259
33331
+
Lys
TTT
[ENA]
¡û
>CHL1810058654
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
30317
30244
-
Lys
TTT
[ENA]
¡û
>C181169657
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
1048980
1049051
+
Lys
TTT
-
¡û
>W09134546
ACSK01000127
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
3796
3725
-
Lys
TTT
[ENA]
¡û
>CHL090800019
AJ271079
Viridiplantae
Oenothera elata subsp. hookeri
4119
1577
-
Lys
TTT
[ENA]
¡û
>CHL090800123
AY660566
Viridiplantae
Huperzia lucidula
70374
67847
-
Lys
TTT
[ENA]
¡û
>CHL090800288
EF115543
Viridiplantae
Agrostis stolonifera
4480
1914
-
Lys
TTT
[ENA]
¡û
>W1810185584
PKGD01000367
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
2037
1966
-
Lys
TTT
[ENA]
¡û
>W10111337
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
84144
84215
+
Lys
TTT
[ENA]
¡û
>W11114280
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
84144
84215
+
Lys
TTT
[ENA]
¡û
>W11143164
AEPQ01000174
Cyanobacteriota
Moorena producens 3L [AEPQ]
545
616
+
Lys
TTT
[ENA]
¡û
>W1511585673
LAYT01000228
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
25850
25921
+
Lys
TTT
[ENA]
¡û
>C161049402
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4456568
4456497
-
Lys
TTT
-
¡û
>C161103160
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4576335
4576264
-
Lys
TTT
-
¡û
Identical group No.428962 (19 seq.)
>W1710882501
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1968
2042
+
Lys
TTT
[ENA]
¡û
>PL171000106
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22727
22801
+
Lys
TTT
[ENA]
¡û
>W141150850
AXAQ01000168
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
2106
2180
+
Lys
TTT
[ENA]
¡û
>WENV171003653
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2568
2492
-
Lys
TTT
[ENA]
¢þ
>PL191000015
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74074
74147
+
Lys
TTT
[ENA]
¡û
>W1910596234
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26822
26898
+
Lys
TTT
[ENA]
¡û
>W1910596318
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26823
26899
+
Lys
TTT
[ENA]
¡û
>W1910596399
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26823
26899
+
Lys
TTT
[ENA]
¡û
>W1910596481
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26821
26897
+
Lys
TTT
[ENA]
¡û
>W1910596561
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26814
26890
+
Lys
TTT
[ENA]
¡û
>W1910596632
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25450
25374
-
Lys
TTT
[ENA]
¡û
>W1910596709
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26821
26897
+
Lys
TTT
[ENA]
¡û
>W1910596777
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28003
28079
+
Lys
TTT
[ENA]
¡û
>W1910596853
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26805
26881
+
Lys
TTT
[ENA]
¡û
>W1910596965
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27043
27119
+
Lys
TTT
[ENA]
¡û
>W1910597011
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28726
28802
+
Lys
TTT
[ENA]
¡û
>W1910597136
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26806
26882
+
Lys
TTT
[ENA]
¡û
>W1910597232
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56443
56519
+
Lys
TTT
[ENA]
¡û
>W1610744427
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1968
2042
+
Lys
TTT
[ENA]
¡û
Identical group No.463818 (2 seq.)
>PL171000090
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
19560
19486
-
Lys
TTT
[ENA]
¡û
>C131005055
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2473350
2473424
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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