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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteria
Anticodon = TTT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485807 (5 seq.)
>PL171000179
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100649
100725
+
Lys
TTT
[ENA]
¡û
>PL171000204
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11783
11858
+
Lys
TTT
[ENA]
¡û
>W141038484
ALVX01000007
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
56388
56313
-
Lys
TTT
[ENA]
¡û
>W1610003573
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2202
2278
+
Lys
TTT
[ENA]
¡û
>W1710004193
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2202
2278
+
Lys
TTT
[ENA]
¡û
Identical group No.538918 (5 seq.)
>W1711081264
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23353
23278
-
Lys
TTT
[ENA]
¡û
>W141021312
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19266
19193
-
Lys
TTT
[ENA]
¡û
>PL191000526
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20361
20287
-
Lys
TTT
[ENA]
¡û
>W1910646686
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23852
23778
-
Lys
TTT
[ENA]
¡û
>W1911218654
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9287
9214
-
Lys
TTT
[ENA]
¡û
Identical group No.549278 (3 seq.)
>PL171000018
AP003604
Cyanobacteria
Nostoc sp. PCC 7120 plasmid:pCC7120delta
50709
50634
-
Lys
TTT
[Ensembl]
¡û
>PL171000140
AP018220
Cyanobacteria
Anabaena variabilis NIES-23 plasmid:plasmid4
5435
5510
+
Lys
TTT
[ENA]
¡û
>C181078419
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6325946
6326021
+
Lys
TTT
-
¡û
Identical group No.658371 (19 seq.)
>W1711509548
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
494221
494150
-
Lys
TTT
[ENA]
¡û
>W1711509602
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
535149
535078
-
Lys
TTT
[ENA]
¡û
>PL171000194
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
35414
35343
-
Lys
TTT
[ENA]
¡û
>C171064227
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
588529
588458
-
Lys
TTT
-
¡û
>W141004296
AFXD01000030
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
27817
27746
-
Lys
TTT
[ENA]
¡û
>W141240131
CAFN01000246
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
2881
2810
-
Lys
TTT
[ENA]
¡û
>CHL1810050480
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
35424
35495
+
Lys
TTT
[ENA]
¡û
>CHL1810058654
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
30317
30244
-
Lys
TTT
[ENA]
¡û
>C181004983
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
7200503
7200574
+
Lys
TTT
-
¡û
>C181169657
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
1048980
1049051
+
Lys
TTT
-
¡û
>W09113164
ABYK01000018
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
54639
54710
+
Lys
TTT
[ENA]
¡û
>W09134546
ACSK01000127
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
3796
3725
-
Lys
TTT
[ENA]
¡û
>W1810185584
PKGD01000367
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
2037
1966
-
Lys
TTT
[ENA]
¡û
>W10111337
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
84144
84215
+
Lys
TTT
[ENA]
¡û
>W11114280
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
84144
84215
+
Lys
TTT
[ENA]
¡û
>W11143164
AEPQ01000174
Cyanobacteriota
Moorena producens 3L [AEPQ]
545
616
+
Lys
TTT
[ENA]
¡û
>W1511585673
LAYT01000228
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
25850
25921
+
Lys
TTT
[ENA]
¡û
>C161049402
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4456568
4456497
-
Lys
TTT
-
¡û
>C161103160
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4576335
4576264
-
Lys
TTT
-
¡û
Identical group No.677240 (2 seq.)
>PL171000521
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1185
1111
-
Lys
TTT
[ENA]
¡û
>WENV180015456
FQKF010701788
[FQKF] soil metagenome; Soil
166
93
-
Lys
TTT
[ENA]
¢þ
Identical group No.744243 (5 seq.)
>W1710882501
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1968
2042
+
Lys
TTT
[ENA]
¡û
>PL171000106
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22727
22801
+
Lys
TTT
[ENA]
¡û
>W141150850
AXAQ01000168
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
2106
2180
+
Lys
TTT
[ENA]
¡û
>PL191000015
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74074
74147
+
Lys
TTT
[ENA]
¡û
>W1610744427
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1968
2042
+
Lys
TTT
[ENA]
¡û
Identical group No.752479 (2 seq.)
>PL171000090
AP018171
Cyanobacteria
Anabaena cylindrica PCC 7122 NIES-19 plasmid:plasmid5
19560
19486
-
Lys
TTT
[ENA]
¡û
>C131005055
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
2473350
2473424
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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