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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Environmental sample from ENV division of INSDC
Anticodon = AAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.93745 (8 seq.)
>W131192610
ASMF01000021
Unclassified
Cloacimonetes bacterium JGI 0000059-L07 WWE1 bacterium JGI 0000059-L07 [ASMF]
19403
19490
+
Leu
AAG
[ENA]
¡û
>WENV180096323
MTBK01123288
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
731
818
+
Leu
AAG
[ENA]
¢þ
>WENV170971596
MTKX01008104
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
19148
19061
-
Leu
AAG
[ENA]
¢þ
>WENV170971945
MTKX01016160
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
329
242
-
Leu
AAG
[ENA]
¢þ
>WENV170975335
MTKZ01000162
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5999
6086
+
Leu
AAG
[ENA]
¢þ
>WENV170976373
MTKZ01007084
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3197
3284
+
Leu
AAG
[ENA]
¢þ
>C151097947
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
1364186
1364273
+
Leu
AAG
-
¡û
>ENV003118
CU466930
Environmental sample from ENV division of INSDC
1364186
1364273
+
Leu
AAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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