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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Environmental sample from ENV division of INSDC
Anticodon = ACG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260973 (2 seq.)
>WENV080655
ABDH01040289
Gut microbiome of termites
3596
3675
+
Arg
ACG
[ENA]
>ENV005263
EU024926
Environmental sample from ENV division of INSDC
3549
3628
+
Arg
ACG
[ENA]
Identical group No.282936 (10 seq.)
>W1710917262
LNVX01000218
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
104711
104637
-
Arg
ACG
[ENA]
¡û
>W1710917332
LNVX01000508
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
2649
2575
-
Arg
ACG
[ENA]
¡û
>W1710917378
LNVX01000857
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
3206
3132
-
Arg
ACG
[ENA]
¡û
>C08011130
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
1091252
1091178
-
Arg
ACG
-
¡û
>WENV170715475
LQAB01001654
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
717
791
+
Arg
ACG
[ENA]
¢þ
>WENV170715537
LQAB01004664
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
8308
8234
-
Arg
ACG
[ENA]
¢þ
>WENV170715796
LQAB01015515
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1312
1386
+
Arg
ACG
[ENA]
¢þ
>WENV170715925
LQAB01020753
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1470
1544
+
Arg
ACG
[ENA]
¢þ
>C181002087
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
1079904
1079830
-
Arg
ACG
-
¡û
>ENV000881
AP009510
Environmental sample from ENV division of INSDC
1091253
1091175
-
Arg
ACG
[ENA]
Identical group No.323856 (10 seq.)
>W131162338
AQYP01000104
Unclassified
Cloacimonetes bacterium JGI 0000039-G13 WWE1 bacterium JGI 0000039-G13 [AQYP]
283
359
+
Arg
ACG
[ENA]
¡û
>W131162393
AQYR01000010
Unclassified
Cloacimonetes bacterium JGI 0000039-P09 WWE1 bacterium JGI 0000039-P09 [AQYR]
11103
11027
-
Arg
ACG
[ENA]
¡û
>WENV180096024
MTBK01103794
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
414
490
+
Arg
ACG
[ENA]
¢þ
>W141139475
AWNP01000029
Unclassified
Cloacimonetes bacterium JGI OTU-3 [AWNP]
283
359
+
Arg
ACG
[ENA]
¡û
>WENV170972380
MTKX01028089
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1054
1130
+
Arg
ACG
[ENA]
¢þ
>WENV170976487
MTKZ01008267
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
218
142
-
Arg
ACG
[ENA]
¢þ
>WENV170977171
MTKZ01018139
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
132
208
+
Arg
ACG
[ENA]
¢þ
>WENV170978292
MTKZ01046083
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
779
855
+
Arg
ACG
[ENA]
¢þ
>C151097941
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
455595
455671
+
Arg
ACG
-
¡û
>ENV003098
CU466930
Environmental sample from ENV division of INSDC
455594
455672
+
Arg
ACG
[ENA]
Identical group No.380036 (6 seq.)
>W1711421334
MHYI01000152
Planctomycetota
Planctomycetes bacterium RBG_16_41_13 [MHYI]
13192
13267
+
Arg
ACG
[ENA]
¡û
>C181227274
LT934425
Planctomycetota
Candidatus Kuenenia stuttgartiensis [LT934425]
184735
184660
-
Arg
ACG
-
¡û
>W1911498155
OCTL01000016
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
13066
13141
+
Arg
ACG
[ENA]
¡û
>W1911498203
OCTL01000117
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
7711
7636
-
Arg
ACG
[ENA]
¡û
>W1911498209
OCTL01000125
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
23267
23192
-
Arg
ACG
[ENA]
¡û
>ENV003064
CT573071
Environmental sample from ENV division of INSDC
1367151
1367229
+
Arg
ACG
[ENA]
Identical group No.398427 (1 seq.)
>ENV001020
AY458634
Environmental sample from ENV division of INSDC
26100
26176
+
Arg
ACG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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