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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Environmental sample from ENV division of INSDC
Anticodon = CAC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7438 (3 seq.)
>ENV004147
DQ397552
Environmental sample from ENV division of INSDC
4624
4718
+
Val
CAC
[ENA]
>ENV004162
DQ397571
Environmental sample from ENV division of INSDC
9165
9259
+
Val
CAC
[ENA]
>ENV004194
DQ397624
Environmental sample from ENV division of INSDC
25760
25854
+
Val
CAC
[ENA]
Identical group No.7439 (3 seq.)
>ENV004213
DQ397837
Environmental sample from ENV division of INSDC
3109
3203
+
Val
CAC
[ENA]
>ENV004224
DQ397846
Environmental sample from ENV division of INSDC
26913
27007
+
Val
CAC
[ENA]
>ENV004232
DQ397855
Environmental sample from ENV division of INSDC
38974
39068
+
Val
CAC
[ENA]
Identical group No.324350 (8 seq.)
>W131162310
AQYO01000046
Unclassified
Cloacimonetes bacterium JGI 0000039-A21 WWE1 bacterium JGI 0000039-A21 [AQYO]
9173
9097
-
Val
CAC
[ENA]
¡û
>W131162325
AQYP01000041
Unclassified
Cloacimonetes bacterium JGI 0000039-G13 WWE1 bacterium JGI 0000039-G13 [AQYP]
174
98
-
Val
CAC
[ENA]
¡û
>W131192609
ASMF01000017
Unclassified
Cloacimonetes bacterium JGI 0000059-L07 WWE1 bacterium JGI 0000059-L07 [ASMF]
3939
4015
+
Val
CAC
[ENA]
¡û
>WENV180095702
MTBK01083838
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1066
1142
+
Val
CAC
[ENA]
¢þ
>W141139489
AWNP01000090
Unclassified
Cloacimonetes bacterium JGI OTU-3 [AWNP]
174
98
-
Val
CAC
[ENA]
¡û
>W141139503
AWNQ01000023
Unclassified
Cloacimonetes bacterium JGI OTU-4 [AWNQ]
9173
9097
-
Val
CAC
[ENA]
¡û
>C151097954
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
2217240
2217164
-
Val
CAC
-
¡û
>ENV003132
CU466930
Environmental sample from ENV division of INSDC
2217240
2217164
-
Val
CAC
[ENA]
Identical group No.398373 (2 seq.)
>WENV170700672
LJSS01000063
[LJSS] hot springs metagenome; water from Lobios Hot Spring
18191
18264
+
Val
CAC
[ENA]
¢þ
>ENV000022
AB201309
Environmental sample from ENV division of INSDC
840
764
-
Val
CAC
[ENA]
Identical group No.398384 (1 seq.)
>ENV000131
AC160099
Environmental sample from ENV division of INSDC
13258
13336
+
Val
CAC
[ENA]
Identical group No.398418 (2 seq.)
>At2091
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
835477
835404
-
Val
CAC
[Ensembl]
¡û
>ENV000756
AM114193
Environmental sample from ENV division of INSDC
835477
835401
-
Val
CAC
[Ensembl]
Identical group No.660456 (3 seq.)
>C08011136
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
796008
795937
-
Val
CAC
-
¡û
>C181002093
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
785577
785506
-
Val
CAC
-
¡û
>ENV000873
AP009510
Environmental sample from ENV division of INSDC
796008
795934
-
Val
CAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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