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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Environmental sample from ENV division of INSDC
Anticodon = CAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.93756 (8 seq.)
>WENV180095675
MTBK01082330
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
200
287
+
Leu
CAG
[ENA]
¢þ
>WENV170971870
MTKX01014062
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
714
627
-
Leu
CAG
[ENA]
¢þ
>WENV170972405
MTKX01029303
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
95
8
-
Leu
CAG
[ENA]
¢þ
>WENV170975693
MTKZ01001901
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
40755
40842
+
Leu
CAG
[ENA]
¢þ
>WENV170977741
MTKZ01030476
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3199
3286
+
Leu
CAG
[ENA]
¢þ
>WENV170978027
MTKZ01038446
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3546
3633
+
Leu
CAG
[ENA]
¢þ
>C151097968
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
1025563
1025476
-
Leu
CAG
-
¡û
>ENV003111
CU466930
Environmental sample from ENV division of INSDC
1025564
1025475
-
Leu
CAG
[ENA]
Identical group No.104457 (2 seq.)
>At2062
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
611687
611771
+
Leu
CAG
[Ensembl]
¡û
>ENV000753
AM114193
Environmental sample from ENV division of INSDC
611686
611775
+
Leu
CAG
[Ensembl]
Identical group No.104463 (2 seq.)
>At0072
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1939286
1939370
+
Leu
CAG
[Ensembl]
¡û
>ENV004157
DQ397567
Environmental sample from ENV division of INSDC
6909
6998
+
Leu
CAG
[ENA]
Identical group No.114611 (3 seq.)
>C08011146
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
306776
306693
-
Leu
CAG
-
¡û
>C181002103
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
302826
302743
-
Leu
CAG
-
¡û
>ENV000851
AP009510
Environmental sample from ENV division of INSDC
306776
306690
-
Leu
CAG
[ENA]
Identical group No.136659 (4 seq.)
>C181227277
LT934425
Planctomycetota
Candidatus Kuenenia stuttgartiensis [LT934425]
69171
69086
-
Leu
CAG
-
¡û
>W1911498174
OCTL01000080
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
9103
9188
+
Leu
CAG
[ENA]
¡û
>W1911498223
OCTL01000153
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
16530
16445
-
Leu
CAG
[ENA]
¡û
>ENV003062
CT573071
Environmental sample from ENV division of INSDC
1302733
1302821
+
Leu
CAG
[ENA]
Identical group No.171738 (1 seq.)
>ENV000129
AC160099
Environmental sample from ENV division of INSDC
12674
12759
+
Leu
CAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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