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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euglenozoa
Anticodon = CAT
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.100340 (1 seq.)
>CHL1810008831
KC684276
Euglenozoa
Euglenaformis proxima SAG 1224-11a (KC684276)
47425
47511
+
Met
CAT
[ENA]
¡û
Identical group No.130242 (1 seq.)
>CHL090103270
X70810
Euglenozoa
Euglena gracilis
60338
60421
+
Met
CAT
[ENA]
¡û
Identical group No.138600 (1 seq.)
>CHL1810017503
KP410781
Euglenozoa
Cryptoglena skujai SAG 10.88 (KP410781)
73156
73073
-
Met
CAT
[ENA]
¡û
Identical group No.142694 (1 seq.)
>CHL1810017554
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
61199
61116
-
Met
CAT
[ENA]
¡û
Identical group No.142695 (1 seq.)
>CHL1810018219
KP939040
Euglenozoa
Euglena archaeoplastidiata Michigan (KP939040)
64348
64265
-
Met
CAT
[ENA]
¡û
Identical group No.144748 (1 seq.)
>CHL1810017698
KP686077
Euglenozoa
Trachelomonas volvocina UTEX 1327 (KP686077)
21360
21277
-
Met
CAT
[ENA]
¡û
Identical group No.148002 (2 seq.)
>CHL1810006179
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
48436
48353
-
Met
CAT
[ENA]
¡û
>CHL1810017581
KP455987
Euglenozoa
Monomorphina parapyrum UTEX 2354 (KP455987)
52816
52733
-
Met
CAT
[ENA]
¡û
Identical group No.152663 (1 seq.)
>CHL090100425
AJ294725
Euglenozoa
Euglena longa
8903
8988
+
Met
CAT
[ENA]
¡û
Identical group No.153538 (1 seq.)
>CHL1810005324
JQ237893
Euglenozoa
Euglena viridis NJ001 (JQ237893)
50587
50672
+
Met
CAT
[ENA]
¡û
Identical group No.238315 (1 seq.)
>CHL1810017490
KP410781
Euglenozoa
Cryptoglena skujai SAG 10.88 (KP410781)
24245
24322
+
Met
CAT
[ENA]
¡û
Identical group No.352277 (1 seq.)
>CHL090103267
X70810
Euglenozoa
Euglena gracilis
30968
31042
+
Met
CAT
[ENA]
¡û
Identical group No.370765 (1 seq.)
>CHL1810008839
KC684276
Euglenozoa
Euglenaformis proxima SAG 1224-11a (KC684276)
89748
89823
+
Met
CAT
[ENA]
¡û
Identical group No.406247 (1 seq.)
>CHL1810017543
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
19515
19590
+
Met
CAT
[ENA]
¡û
Identical group No.406250 (1 seq.)
>CHL1810018207
KP939040
Euglenozoa
Euglena archaeoplastidiata Michigan (KP939040)
20815
20890
+
Met
CAT
[ENA]
¡û
Identical group No.414357 (1 seq.)
>CHL1810017690
KP686077
Euglenozoa
Trachelomonas volvocina UTEX 1327 (KP686077)
61516
61441
-
Met
CAT
[ENA]
¡û
Identical group No.428324 (1 seq.)
>CHL1810006167
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
13407
13482
+
Met
CAT
[ENA]
¡û
Identical group No.445225 (2 seq.)
>CHL1810005321
JQ237893
Euglenozoa
Euglena viridis NJ001 (JQ237893)
28513
28586
+
Met
CAT
[ENA]
¡û
>CHL1810017569
KP455987
Euglenozoa
Monomorphina parapyrum UTEX 2354 (KP455987)
16084
16157
+
Met
CAT
[ENA]
¡û
Identical group No.447089 (1 seq.)
>CHL090100449
AJ294725
Euglenozoa
Euglena longa
37146
37073
-
Met
CAT
[ENA]
¡û
Identical group No.581950 (1 seq.)
>CHL1810017493
KP410781
Euglenozoa
Cryptoglena skujai SAG 10.88 (KP410781)
37648
37722
+
Met
CAT
[ENA]
¡û
Identical group No.706714 (1 seq.)
>CHL090103286
X70810
Euglenozoa
Euglena gracilis
100757
100686
-
Met
CAT
[ENA]
¡û
Identical group No.719332 (1 seq.)
>CHL1810008837
KC684276
Euglenozoa
Euglenaformis proxima SAG 1224-11a (KC684276)
89419
89490
+
Met
CAT
[ENA]
¡û
Identical group No.744284 (4 seq.)
>CHL1810006170
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
25237
25308
+
Met
CAT
[ENA]
¡û
>CHL1810017572
KP455987
Euglenozoa
Monomorphina parapyrum UTEX 2354 (KP455987)
29026
29097
+
Met
CAT
[ENA]
¡û
>CHL1810017693
KP686077
Euglenozoa
Trachelomonas volvocina UTEX 1327 (KP686077)
48007
47934
-
Met
CAT
[ENA]
¡û
>CHL1810018210
KP939040
Euglenozoa
Euglena archaeoplastidiata Michigan (KP939040)
34900
34971
+
Met
CAT
[ENA]
¡û
Identical group No.744339 (1 seq.)
>CHL1830000866
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
33223
33294
+
Met
CAT
[ENA]
¡û
Identical group No.776282 (1 seq.)
>CHL090100441
AJ294725
Euglenozoa
Euglena longa
60738
60667
-
Met
CAT
[ENA]
¡û
Identical group No.778927 (1 seq.)
>CHL1810005336
JQ237893
Euglenozoa
Euglena viridis NJ001 (JQ237893)
72902
72829
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK