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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euglenozoa
Anticodon = TGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352278 (10 seq.)
>WENV180104086
OAPB01076642
[OAPB] marine metagenome; Sterile flask
155
82
-
Pro
TGG
[ENA]
¢þ
>WENV170481180
CEVL01170026
[CEVL] marine metagenome genome assembly TARA_146_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3360
3433
+
Pro
TGG
[ENA]
¢þ
>CHL1810005327
JQ237893
Euglenozoa
Euglena viridis NJ001 (JQ237893)
57976
58049
+
Pro
TGG
[ENA]
¡û
>CHL1810006182
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
40796
40723
-
Pro
TGG
[ENA]
¡û
>CHL1810017506
KP410781
Euglenozoa
Cryptoglena skujai SAG 10.88 (KP410781)
65022
64947
-
Pro
TGG
[ENA]
¡û
>CHL1810017557
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
52003
51930
-
Pro
TGG
[ENA]
¡û
>CHL1810017584
KP455987
Euglenozoa
Monomorphina parapyrum UTEX 2354 (KP455987)
45021
44948
-
Pro
TGG
[ENA]
¡û
>CHL1810017701
KP686077
Euglenozoa
Trachelomonas volvocina UTEX 1327 (KP686077)
12674
12601
-
Pro
TGG
[ENA]
¡û
>CHL1810018222
KP939040
Euglenozoa
Euglena archaeoplastidiata Michigan (KP939040)
56073
55998
-
Pro
TGG
[ENA]
¡û
>CHL090103273
X70810
Euglenozoa
Euglena gracilis
70918
70993
+
Pro
TGG
[ENA]
¡û
Identical group No.370764 (1 seq.)
>CHL1810008834
KC684276
Euglenozoa
Euglenaformis proxima SAG 1224-11a (KC684276)
57713
57788
+
Pro
TGG
[ENA]
¡û
Identical group No.447086 (1 seq.)
>CHL090100428
AJ294725
Euglenozoa
Euglena longa
17018
17091
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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