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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euglenozoa
Anticodon = TGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.581948 (1 seq.)
>CHL1810017488
KP410781
Euglenozoa
Cryptoglena skujai SAG 10.88 (KP410781)
24072
24144
+
Thr
TGT
[ENA]
¡û
Identical group No.706709 (1 seq.)
>CHL090103265
X70810
Euglenozoa
Euglena gracilis
30807
30878
+
Thr
TGT
[ENA]
¡û
Identical group No.719329 (2 seq.)
>CHL1810005319
JQ237893
Euglenozoa
Euglena viridis NJ001 (JQ237893)
28337
28411
+
Thr
TGT
[ENA]
¡û
>CHL1810008825
KC684276
Euglenozoa
Euglenaformis proxima SAG 1224-11a (KC684276)
4789
4862
+
Thr
TGT
[ENA]
¡û
Identical group No.744276 (1 seq.)
>CHL1810017541
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
19342
19413
+
Thr
TGT
[ENA]
¡û
Identical group No.744282 (1 seq.)
>CHL1810018205
KP939040
Euglenozoa
Euglena archaeoplastidiata Michigan (KP939040)
20652
20725
+
Thr
TGT
[ENA]
¡û
Identical group No.750865 (1 seq.)
>CHL1810017688
KP686077
Euglenozoa
Trachelomonas volvocina UTEX 1327 (KP686077)
61679
61608
-
Thr
TGT
[ENA]
¡û
Identical group No.760747 (1 seq.)
>CHL1810006165
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
13239
13310
+
Thr
TGT
[ENA]
¡û
Identical group No.775046 (1 seq.)
>CHL1810017567
KP455987
Euglenozoa
Monomorphina parapyrum UTEX 2354 (KP455987)
15924
15995
+
Thr
TGT
[ENA]
¡û
Identical group No.776283 (1 seq.)
>CHL090100448
AJ294725
Euglenozoa
Euglena longa
37262
37191
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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