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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euglenozoa
Anticodon = TTC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.388469 (1 seq.)
>CHL1830000862
KP410781
Euglenozoa
Cryptoglena skujai SAG 10.88 (KP410781)
37832
37907
+
Glu
TTC
[ENA]
¡û
Identical group No.541125 (1 seq.)
>CHL090200169
X70810
Euglenozoa
Euglena gracilis
100582
100508
-
Glu
TTC
[ENA]
¡û
Identical group No.561565 (1 seq.)
>CHL1830000472
KC684276
Euglenozoa
Euglenaformis proxima SAG 1224-11a (KC684276)
89585
89657
+
Glu
TTC
[ENA]
¡û
Identical group No.601901 (4 seq.)
>CHL1830000294
JQ237893
Euglenozoa
Euglena viridis NJ001 (JQ237893)
72721
72647
-
Glu
TTC
[ENA]
¡û
>CHL1830000867
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
33408
33482
+
Glu
TTC
[ENA]
¡û
>CHL1830000868
KP455987
Euglenozoa
Monomorphina parapyrum UTEX 2354 (KP455987)
29219
29293
+
Glu
TTC
[ENA]
¡û
>CHL1830000873
KP686077
Euglenozoa
Trachelomonas volvocina UTEX 1327 (KP686077)
47837
47762
-
Glu
TTC
[ENA]
¡û
Identical group No.601902 (1 seq.)
>CHL1830000895
KP939040
Euglenozoa
Euglena archaeoplastidiata Michigan (KP939040)
35073
35147
+
Glu
TTC
[ENA]
¡û
Identical group No.627334 (1 seq.)
>CHL1830000333
JX457480
Euglenozoa
Monomorphina aenigmatica UTEX1284 (JX457480)
25428
25502
+
Glu
TTC
[ENA]
¡û
Identical group No.648232 (1 seq.)
>CHL090200021
AJ294725
Euglenozoa
Euglena longa
60551
60476
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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