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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = CGG
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244842 (6 seq.)
>A171001877
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1530128
1530205
+
Pro
CGG
-
¡û
>A171002306
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1617082
1617005
-
Pro
CGG
-
¡û
>A171004048
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1651951
1652028
+
Pro
CGG
-
¡û
>A171006486
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1547179
1547102
-
Pro
CGG
-
¡û
>W1610000729
ABSF01000012
Euryarchaeota
Thermococcus barophilus MP [ABSF]
247884
247807
-
Pro
CGG
[ENA]
¡û
>W1610548855
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
418399
418476
+
Pro
CGG
[ENA]
¡û
Identical group No.248063 (6 seq.)
>A171004636
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2816781
2816707
-
Pro
CGG
-
¡û
>A171004678
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3342018
3342092
+
Pro
CGG
-
¡û
>A171004770
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
610638
610712
+
Pro
CGG
-
¡û
>A171004823
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
587926
588000
+
Pro
CGG
-
¡û
>A171004876
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
621374
621448
+
Pro
CGG
-
¡û
>At1373
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
702737
702811
+
Pro
CGG
[Ensembl]
¡û
Identical group No.248065 (1 seq.)
>A171005680
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1333357
1333282
-
Pro
CGG
-
¡û
Identical group No.250425 (11 seq.)
>A171001449
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1539780
1539854
+
Pro
CGG
-
¡û
>A171006812
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1185303
1185229
-
Pro
CGG
-
¡û
>W1910228342
FNMU01000006
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
112565
112491
-
Pro
CGG
[ENA]
¡û
>W1910471813
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
15867
15941
+
Pro
CGG
[ENA]
¡û
>W1910582988
JWTK01000005
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
54240
54166
-
Pro
CGG
[ENA]
¡û
>W1910672555
MCNQ01000011
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
7997
8071
+
Pro
CGG
[ENA]
¡û
>W1911492135
OBDR01000006
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
8173
8247
+
Pro
CGG
[ENA]
¡û
>W1911633781
PVBU01000015
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
7869
7943
+
Pro
CGG
[ENA]
¡û
>W1911653208
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1556917
1556843
-
Pro
CGG
[ENA]
¡û
>W1610919862
LSRU01000038
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
24810
24736
-
Pseudo
CGG
[ENA]
¡û
>W1611052498
MAFX01000016
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
20613
20687
+
Pseudo
CGG
[ENA]
¡û
Identical group No.250702 (3 seq.)
>A171002573
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1041114
1041191
+
Pro
CGG
-
¡û
>A171007124
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
62139
62062
-
Pro
CGG
-
¡û
>W1610717912
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
6801
6878
+
Pro
CGG
[ENA]
¡û
Identical group No.250833 (7 seq.)
>A171000473
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
466514
466591
+
Pro
CGG
-
¡û
>A171002667
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1912548
1912625
+
Pro
CGG
-
¡û
>A171004216
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1126274
1126351
+
Pro
CGG
-
¡û
>A171004293
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1755095
1755018
-
Pro
CGG
-
¡û
>A171006606
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
843834
843757
-
Pro
CGG
-
¡û
>At1960
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1727255
1727178
-
Pro
CGG
[Ensembl]
¡û
>W1610000877
ABXN01000011
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
45163
45240
+
Pro
CGG
[ENA]
¡û
Identical group No.250838 (1 seq.)
>A178000170
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1109071
1108966
-
Pro
CGG
-
¡û
Identical group No.252731 (4 seq.)
>A171002162
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
448939
449016
+
Pro
CGG
-
¡û
>A171003255
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
64829
64906
+
Pro
CGG
-
¡û
>A171007492
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
66920
66997
+
Pro
CGG
-
¡û
>At1779
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
4930
5007
+
Pro
CGG
[Ensembl]
¡û
Identical group No.253139 (2 seq.)
>A171003358
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1572121
1572198
+
Pro
CGG
-
¡û
>At1870
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1831351
1831274
-
Pro
CGG
[Ensembl]
¡û
Identical group No.256460 (5 seq.)
>A171000209
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1804842
1804765
-
Pro
CGG
-
¡û
>A171003310
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
683458
683535
+
Pro
CGG
-
¡û
>A171006670
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1045772
1045695
-
Pro
CGG
-
¡û
>W1910229983
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
699601
699678
+
Pro
CGG
[ENA]
¡û
>W1610638233
LIXN01000007
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
50704
50781
+
Pro
CGG
[ENA]
¡û
Identical group No.256464 (1 seq.)
>A171004739
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3749307
3749233
-
Pro
CGG
-
¡û
Identical group No.259860 (1 seq.)
>A171003783
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1824813
1824890
+
Pro
CGG
-
¡û
Identical group No.261595 (1 seq.)
>At1871
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
6125
6202
+
Pro
CGG
[Ensembl]
¡û
Identical group No.262400 (1 seq.)
>A178000159
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
305958
306056
+
Pro
CGG
-
¡û
Identical group No.264089 (1 seq.)
>A178000492
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
579762
579867
+
Pro
CGG
-
¡û
Identical group No.265380 (1 seq.)
>A178000328
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1632006
1631909
-
Pro
CGG
-
¡û
Identical group No.266432 (1 seq.)
>A171005896
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1320389
1320312
-
Pro
CGG
-
¡û
Identical group No.269531 (1 seq.)
>A178000291
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
871069
871165
+
Pro
CGG
-
¡û
Identical group No.338096 (2 seq.)
>A171001231
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
1700573
1700500
-
Pro
CGG
-
¡û
>W1610001599
ACYZ01000008
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
36452
36379
-
Pseudo
CGG
[ENA]
¡û
Identical group No.338241 (1 seq.)
>A171006109
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
817544
817619
+
Pro
CGG
-
¡û
Identical group No.422924 (1 seq.)
>A171003645
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
582369
582442
+
Pro
CGG
-
¡û
Identical group No.510354 (2 seq.)
>At0833
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1461208
1461136
-
Pro
CGG
[Ensembl]
¡û
>At1694
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
1132546
1132618
+
Pro
CGG
[Ensembl]
¡û
Identical group No.526115 (4 seq.)
>A171000402
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
2526954
2526882
-
Pro
CGG
-
¡û
>A171001752
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
770185
770257
+
Pro
CGG
-
¡û
>W1610001000
ABZB01000002
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
443646
443574
-
Pseudo
CGG
[ENA]
¡û
>W1610029772
AXDV01000024
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
13503
13431
-
Pseudo
CGG
[ENA]
¡û
Identical group No.641924 (1 seq.)
>At0767
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2873004
2873076
+
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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