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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GAC
HIT:
38 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241109 (17 seq.)
>A171003042
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1118483
1118558
+
Val
GAC
-
¡û
>A171003185
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1400424
1400349
-
Val
GAC
-
¡û
>W1910568517
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
861829
861903
+
Val
GAC
[ENA]
¡û
>W1910569051
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
634187
634112
-
Val
GAC
[ENA]
¡û
>W1910572711
JNCS01000003
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
292966
292891
-
Val
GAC
[ENA]
¡û
>W1910583029
JXAN01000106
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
8777
8852
+
Val
GAC
[ENA]
¡û
>W1910646110
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
904121
904196
+
Val
GAC
[ENA]
¡û
>W1911433998
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2328048
2327973
-
Val
GAC
[ENA]
¡û
>W1911718010
QQTY01000005
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
70855
70781
-
Val
GAC
[ENA]
¡û
>W1610004116
AGIN01000001
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
143286
143361
+
Val
GAC
[ENA]
¡û
>W1610005368
AJVG01000004
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
164691
164616
-
Val
GAC
[ENA]
¡û
>W1610012211
AOID01000030
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
8367
8442
+
Val
GAC
[ENA]
¡û
>W1610012237
AOIE01000008
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
38822
38747
-
Val
GAC
[ENA]
¡û
>W1610012308
AOII01000080
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
27715
27790
+
Val
GAC
[ENA]
¡û
>W1610012332
AOIJ01000038
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
12216
12141
-
Val
GAC
[ENA]
¡û
>W1610012383
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
365388
365463
+
Val
GAC
[ENA]
¡û
>W1610012673
AOIR01000048
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
153976
154050
+
Val
GAC
[ENA]
¡û
Identical group No.241153 (16 seq.)
>A171000012
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1219519
1219593
+
Val
GAC
-
¡û
>A171004180
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
2156557
2156632
+
Val
GAC
-
¡û
>A171007444
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1795827
1795902
+
Val
GAC
-
¡û
>At0806
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1228868
1228942
+
Val
GAC
[Ensembl]
¡û
>W1910230025
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
2492792
2492717
-
Val
GAC
[ENA]
¡û
>W1610004185
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1201923
1201848
-
Val
GAC
[ENA]
¡û
>W1610041350
BANO01000145
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
1345
1420
+
Val
GAC
[ENA]
¡û
>W1610041537
BATA01000036
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
9169
9094
-
Val
GAC
[ENA]
¡û
>W1610061864
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1836894
1836969
+
Val
GAC
[ENA]
¡û
>W1610085062
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
554684
554759
+
Val
GAC
[ENA]
¡û
>W1610085127
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
904902
904827
-
Val
GAC
[ENA]
¡û
>W1610085166
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
947733
947658
-
Val
GAC
[ENA]
¡û
>W1610085205
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
946767
946692
-
Val
GAC
[ENA]
¡û
>W1610085228
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1612043
1612118
+
Val
GAC
[ENA]
¡û
>W1610085261
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
554789
554864
+
Val
GAC
[ENA]
¡û
>W1610085310
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1568634
1568709
+
Val
GAC
[ENA]
¡û
Identical group No.244706 (4 seq.)
>A171000754
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
1849941
1849866
-
Val
GAC
-
¡û
>A171007234
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1858153
1858227
+
Val
GAC
-
¡û
>W1610000853
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
2581327
2581252
-
Val
GAC
[ENA]
¡û
>W1610003278
AFNT02000026
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
20403
20329
-
Val
GAC
[ENA]
¡û
Identical group No.247700 (3 seq.)
>A171002707
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2161590
2161665
+
Val
GAC
-
¡û
>W1911572218
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2754034
2754108
+
Val
GAC
[ENA]
¡û
>W1610012656
AOIQ01000021
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
243168
243093
-
Val
GAC
[ENA]
¡û
Identical group No.248033 (3 seq.)
>A171001566
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
771134
771208
+
Val
GAC
-
¡û
>W1610011875
AOHV01000040
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
58454
58380
-
Val
GAC
[ENA]
¡û
>W1610029920
AXZD01000005
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
59142
59216
+
Val
GAC
[ENA]
¡û
Identical group No.248073 (2 seq.)
>A171004402
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1673430
1673505
+
Val
GAC
-
¡û
>A171006160
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1673521
1673596
+
Val
GAC
-
¡û
Identical group No.250583 (2 seq.)
>A171006870
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2674079
2674005
-
Val
GAC
-
¡û
>W1910229680
FOCX01000001
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
73908
73982
+
Val
GAC
[ENA]
¡û
Identical group No.250709 (2 seq.)
>A171002603
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
667170
667093
-
Val
GAC
-
¡û
>W1610717934
LLYW01000029
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
70448
70371
-
Val
GAC
[ENA]
¡û
Identical group No.250822 (1 seq.)
>A171003727
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
1448503
1448578
+
Val
GAC
-
¡û
Identical group No.252405 (2 seq.)
>A171003782
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1641550
1641627
+
Val
GAC
-
¡û
>W1910597289
LANF01000015
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
18373
18296
-
Val
GAC
[ENA]
¡û
Identical group No.252737 (8 seq.)
>A171002186
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1221847
1221770
-
Val
GAC
-
¡û
>A171003269
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1082705
1082782
+
Val
GAC
-
¡û
>A171003351
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
723058
723135
+
Val
GAC
-
¡û
>A171005899
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
926881
926804
-
Val
GAC
-
¡û
>A171007529
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
635921
635844
-
Val
GAC
-
¡û
>At1801
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1315623
1315700
+
Val
GAC
[Ensembl]
¡û
>At1835
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
920960
921037
+
Val
GAC
[Ensembl]
¡û
>At1894
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
613082
613005
-
Val
GAC
[Ensembl]
¡û
Identical group No.265376 (2 seq.)
>A171006717
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
458138
458064
-
Val
GAC
-
¡û
>A171006758
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
445984
445910
-
Val
GAC
-
¡û
Identical group No.274465 (3 seq.)
>A171000772
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1694114
1694187
+
Val
GAC
-
¡û
>W1610000810
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2032601
2032528
-
Val
GAC
[ENA]
¡û
>W1610018988
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
111988
111915
-
Val
GAC
[ENA]
¡û
Identical group No.275012 (10 seq.)
>A171000287
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
561411
561335
-
Val
GAC
-
¡û
>A171002498
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
331859
331935
+
Val
GAC
-
¡û
>At1069
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1279411
1279335
-
Val
GAC
[Ensembl]
¡û
>At1099
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1304236
1304312
+
Val
GAC
[Ensembl]
¡û
>At1130
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
339245
339321
+
Val
GAC
[Ensembl]
¡û
>At1174
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1379952
1380028
+
Val
GAC
[Ensembl]
¡û
>W1610000330
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
70443
70367
-
Val
GAC
[ENA]
¡û
>W1610000365
AAWX01000002
Euryarchaeota
Methanococcus vannielii SB [AAWX]
130531
130607
+
Val
GAC
[ENA]
¡û
>W1610000480
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
469575
469499
-
Val
GAC
[ENA]
¡û
>W1610000581
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1408037
1407961
-
Val
GAC
[ENA]
¡û
Identical group No.336253 (10 seq.)
>A171006805
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1959315
1959241
-
Val
GAC
-
¡û
>W1910228316
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
342891
342817
-
Val
GAC
[ENA]
¡û
>W1910471808
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
214995
214921
-
Val
GAC
[ENA]
¡û
>W1910582959
JWTK01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
214919
214845
-
Val
GAC
[ENA]
¡û
>W1910672547
MCNQ01000008
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
248069
247995
-
Val
GAC
[ENA]
¡û
>W1911492116
OBDR01000001
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
375582
375508
-
Val
GAC
[ENA]
¡û
>W1911633760
PVBU01000005
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
48251
48325
+
Val
GAC
[ENA]
¡û
>W1911653226
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
192364
192290
-
Val
GAC
[ENA]
¡û
>W1610919871
LSRU01000084
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
6068
5993
-
Val
GAC
[ENA]
¡û
>W1611052484
MAFX01000001
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
20279
20205
-
Val
GAC
[ENA]
¡û
Identical group No.338081 (2 seq.)
>A171001549
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1932497
1932423
-
Val
GAC
-
¡û
>W1610000606
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
1089888
1089814
-
Val
GAC
[ENA]
¡û
Identical group No.338124 (2 seq.)
>A171001768
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
2407196
2407122
-
Val
GAC
-
¡û
>W1610029791
AXDV01000073
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
8321
8395
+
Val
GAC
[ENA]
¡û
Identical group No.338264 (1 seq.)
>A173000050
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
890676
890601
-
Val
GAC
-
¡û
Identical group No.359494 (3 seq.)
>A171005367
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
701709
701785
+
Val
GAC
-
¡û
>W1910229870
FOHQ01000007
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
156868
156944
+
Val
GAC
[ENA]
¡û
>W1910575254
JRHO01000005
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
165068
165144
+
Val
GAC
[ENA]
¡û
Identical group No.372478 (2 seq.)
>At1345
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
1300884
1300957
+
Val
GAC
[Ensembl]
¡û
>W1610000214
AAOR01000001
Euryarchaeota
Methanothrix thermoacetophila PT [AAOR]
563256
563181
-
Val
GAC
[ENA]
¡û
Identical group No.372608 (1 seq.)
>A171001792
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
199599
199673
+
Val
GAC
-
¡û
Identical group No.381769 (2 seq.)
>A171005594
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3018645
3018571
-
Val
GAC
-
¡û
>A171005609
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
126231
126305
+
Val
GAC
-
¡û
Identical group No.382542 (1 seq.)
>At1314
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
299603
299530
-
Val
GAC
[Ensembl]
¡û
Identical group No.407494 (1 seq.)
>A171001639
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
727200
727124
-
Val
GAC
-
¡û
Identical group No.417144 (1 seq.)
>At1241
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1576177
1576104
-
Val
GAC
[Ensembl]
¡û
Identical group No.422914 (2 seq.)
>A171000376
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
457558
457631
+
Val
GAC
-
¡û
>W1610000978
ABZB01000001
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
34821
34894
+
Val
GAC
[ENA]
¡û
Identical group No.422922 (1 seq.)
>A171003580
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
149772
149845
+
Val
GAC
-
¡û
Identical group No.446331 (1 seq.)
>A171001442
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
765406
765480
+
Val
GAC
-
¡û
Identical group No.446334 (1 seq.)
>A171002773
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
796196
796120
-
Val
GAC
-
¡û
Identical group No.507978 (2 seq.)
>A171005702
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
166852
166780
-
Val
GAC
-
¡û
>A171006110
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
922076
922149
+
Val
GAC
-
¡û
Identical group No.526083 (2 seq.)
>A171001219
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
1732901
1732974
+
Val
GAC
-
¡û
>W1610001598
ACYZ01000008
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
68782
68855
+
Val
GAC
[ENA]
¡û
Identical group No.551682 (2 seq.)
>A171003823
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
2261269
2261341
+
Val
GAC
-
¡û
>W1910200383
FJNF01000196
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
100597
100669
+
Val
GAC
[ENA]
¡û
Identical group No.585683 (1 seq.)
>A171006883
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2242692
2242620
-
Val
GAC
-
¡û
Identical group No.620850 (2 seq.)
>A171002111
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
1702916
1702843
-
Val
GAC
-
¡û
>A171003680
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
770848
770775
-
Val
GAC
-
¡û
Identical group No.673268 (1 seq.)
>A171002269
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
738825
738752
-
Val
GAC
-
¡û
Identical group No.673279 (3 seq.)
>A171000949
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2186090
2186019
-
Val
GAC
-
¡û
>A171006564
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1391735
1391664
-
Val
GAC
-
¡û
>W1910230532
FOTL01000003
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
578
649
+
Val
GAC
[ENA]
¡û
Identical group No.697593 (4 seq.)
>A171003557
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
632586
632657
+
Val
GAC
-
¡û
>W1910569109
JHWX01000007
Euryarchaeota
Methanobrevibacter wolinii SH [JHWX]
77434
77363
-
Val
GAC
[ENA]
¡û
>W1910793167
MRCT01000132
Euryarchaeota
Methanobrevibacter sp. 87.7 [MRCT]
744
815
+
Val
GAC
[ENA]
¡û
>W1610040636
BAGX02000034
Euryarchaeota
Methanobrevibacter boviskoreani JH1 [BAGX]
20424
20495
+
Val
GAC
[ENA]
¡û
Identical group No.775768 (1 seq.)
>A171000962
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
362026
361954
-
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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