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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GTG
HIT:
40 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252720 (1 seq.)
>A171002311
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1128215
1128138
-
His
GTG
-
¡û
Identical group No.258325 (1 seq.)
>At1319
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
864537
864460
-
His
GTG
[Ensembl]
¡û
Identical group No.337843 (5 seq.)
>A171002575
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1476253
1476329
+
His
GTG
-
¡û
>A171007108
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1550260
1550184
-
His
GTG
-
¡û
>W1910230002
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
259002
258926
-
His
GTG
[ENA]
¡û
>W1610638243
LIXN01000016
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
4114
4038
-
His
GTG
[ENA]
¡û
>W1610717909
LLYW01000001
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
6776
6852
+
His
GTG
[ENA]
¡û
Identical group No.347935 (10 seq.)
>A171000211
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1405094
1405018
-
His
GTG
-
¡û
>A171000513
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
90386
90310
-
His
GTG
-
¡û
>A171002676
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1493365
1493289
-
His
GTG
-
¡û
>A171003312
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1148427
1148503
+
His
GTG
-
¡û
>A171004233
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
773629
773553
-
His
GTG
-
¡û
>A171004296
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1042473
1042397
-
His
GTG
-
¡û
>A171004431
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
249233
249309
+
His
GTG
-
¡û
>A171006644
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
821712
821788
+
His
GTG
-
¡û
>W1910597298
LANF01000019
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
10563
10487
-
His
GTG
[ENA]
¡û
>W1610000869
ABXN01000007
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
33537
33461
-
His
GTG
[ENA]
¡û
Identical group No.352555 (4 seq.)
>A171002192
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
427242
427166
-
His
GTG
-
¡û
>A171003366
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1525683
1525607
-
His
GTG
-
¡û
>At1843
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1878576
1878652
+
His
GTG
[Ensembl]
¡û
>At1915
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1640468
1640392
-
His
GTG
[Ensembl]
¡û
Identical group No.372643 (1 seq.)
>A171006406
CP012986
Euryarchaeota
Nanohaloarchaea archaeon SG9 [CP012986]
1114614
1114688
+
His
GTG
-
¡û
Identical group No.485700 (1 seq.)
>A171002250
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2210002
2210074
+
His
GTG
-
¡û
Identical group No.507706 (5 seq.)
>A171001601
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
350458
350385
-
His
GTG
-
¡û
>A171004184
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
2650200
2650273
+
His
GTG
-
¡û
>W1610004189
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
708280
708207
-
Pseudo
GTG
[ENA]
¡û
>W1610011877
AOHV01000042
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
351613
351686
+
Pseudo
GTG
[ENA]
¡û
>W1610029917
AXZD01000002
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
34766
34693
-
Pseudo
GTG
[ENA]
¡û
Identical group No.526137 (4 seq.)
>A171003569
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851195
1851120
-
His
GTG
-
¡û
>W1910569107
JHWX01000006
Euryarchaeota
Methanobrevibacter wolinii SH [JHWX]
4965
5040
+
His
GTG
[ENA]
¡û
>W1910793163
MRCT01000102
Euryarchaeota
Methanobrevibacter sp. 87.7 [MRCT]
1852
1927
+
His
GTG
[ENA]
¡û
>W1610040625
BAGX02000020
Euryarchaeota
Methanobrevibacter boviskoreani JH1 [BAGX]
154559
154484
-
His
GTG
[ENA]
¡û
Identical group No.551681 (1 seq.)
>A171002935
CP003243
Euryarchaeota
Methanocella conradii HZ254 [CP003243]
242291
242218
-
His
GTG
-
¡û
Identical group No.551683 (3 seq.)
>A171004797
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
3237302
3237229
-
His
GTG
-
¡û
>A171004850
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3200235
3200162
-
His
GTG
-
¡û
>A171004907
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3507845
3507772
-
His
GTG
-
¡û
Identical group No.551685 (1 seq.)
>A171006079
CP011266
Euryarchaeota
Methanobrevibacter millerae SM9 [CP011266]
2296490
2296415
-
His
GTG
-
¡û
Identical group No.563632 (1 seq.)
>A171001806
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
1003738
1003812
+
His
GTG
-
¡û
Identical group No.594122 (1 seq.)
>A171000046
AP011532
Euryarchaeota
Methanocella paludicola SANAE [AP011532]
264230
264303
+
His
GTG
-
¡û
Identical group No.620834 (2 seq.)
>A171000375
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
363039
363111
+
His
GTG
-
¡û
>W1610001010
ABZB01000003
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
524462
524534
+
His
GTG
[ENA]
¡û
Identical group No.629193 (1 seq.)
>A171007448
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
2220125
2220198
+
His
GTG
-
¡û
Identical group No.647523 (1 seq.)
>A171000967
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
361222
361149
-
Pseudo
GTG
-
¡û
Identical group No.655758 (8 seq.)
>A171000264
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
962505
962579
+
His
GTG
-
¡û
>A171002509
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1686525
1686451
-
His
GTG
-
¡û
>At1060
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1700379
1700453
+
His
GTG
[Ensembl]
¡û
>At1108
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
893695
893621
-
His
GTG
[Ensembl]
¡û
>At1150
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1600972
1600898
-
His
GTG
[Ensembl]
¡û
>W1610000343
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
206032
205958
-
His
GTG
[ENA]
¡û
>W1610000452
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
95015
95089
+
His
GTG
[ENA]
¡û
>W1610000559
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
64014
64088
+
His
GTG
[ENA]
¡û
Identical group No.655771 (3 seq.)
>A171005535
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3414276
3414204
-
His
GTG
-
¡û
>At1449
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2651461
2651532
+
His
GTG
[Ensembl]
¡û
>W1610000029
AAAR03000009
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
25129
25203
+
Pseudo
GTG
[ENA]
¡û
Identical group No.659729 (4 seq.)
>At1617
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
2761125
2761196
+
His
GTG
[Ensembl]
¡û
>W1911675972
QGMZ01000038
Euryarchaeota
Methanospirillum stamsii Pt1 [QGMZ]
4592
4521
-
His
GTG
[ENA]
¡û
>W1610000184
AALU01000015
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
51698
51769
+
Pseudo
GTG
[ENA]
¡û
>W1610946061
LUYJ01000186
Euryarchaeota
Methanomicrobiales archaeon Methan_06 [LUYJ]
3534
3605
+
Pseudo
GTG
[ENA]
¡û
Identical group No.673073 (4 seq.)
>A171000729
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
1615153
1615225
+
His
GTG
-
¡û
>W1910228454
FNPC01000001
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
485002
485076
+
His
GTG
[ENA]
¡û
>W1610000839
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
2346556
2346628
+
Pseudo
GTG
[ENA]
¡û
>W1610021318
ATCR02000005
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
195268
195343
+
Pseudo
GTG
[ENA]
¡û
Identical group No.673269 (2 seq.)
>A171002343
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
819235
819163
-
His
GTG
-
¡û
>W1610002120
AEDA01000001
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
51971
51899
-
His
GTG
[ENA]
¡û
Identical group No.686527 (2 seq.)
>A171005685
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1147601
1147529
-
His
GTG
-
¡û
>A171006136
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
903325
903253
-
His
GTG
-
¡û
Identical group No.696176 (12 seq.)
>A171001429
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
318348
318422
+
His
GTG
-
¡û
>A171006821
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
404217
404143
-
His
GTG
-
¡û
>W1910228306
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
218437
218363
-
His
GTG
[ENA]
¡û
>W1910471796
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
755102
755028
-
His
GTG
[ENA]
¡û
>W1910582965
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
254869
254943
+
His
GTG
[ENA]
¡û
>W1910672534
MCNQ01000002
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
138404
138478
+
His
GTG
[ENA]
¡û
>W1911492142
OBDR01000010
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
38651
38577
-
His
GTG
[ENA]
¡û
>W1911633773
PVBU01000008
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
43301
43375
+
His
GTG
[ENA]
¡û
>W1911653217
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
813111
813037
-
His
GTG
[ENA]
¡û
>W1610919885
LSRU01000180
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
1035
961
-
His
GTG
[ENA]
¡û
>W1610919889
LSRU01000221
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
2017
2091
+
His
GTG
[ENA]
¡û
>W1611052487
MAFX01000004
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
23213
23139
-
His
GTG
[ENA]
¡û
Identical group No.697561 (2 seq.)
>A171001537
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1463512
1463586
+
His
GTG
-
¡û
>W1610000613
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
111230
111156
-
His
GTG
[ENA]
¡û
Identical group No.697580 (2 seq.)
>A171001771
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
2188959
2188888
-
His
GTG
-
¡û
>W1610029773
AXDV01000025
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
110036
110107
+
His
GTG
[ENA]
¡û
Identical group No.705086 (2 seq.)
>At1184
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
975148
975074
-
His
GTG
[Ensembl]
¡û
>W1610000355
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
711718
711644
-
His
GTG
[ENA]
¡û
Identical group No.705184 (1 seq.)
>A173000085
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
465306
465380
+
Pseudo
GTG
-
¡û
Identical group No.711880 (3 seq.)
>A171005350
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
324775
324849
+
His
GTG
-
¡û
>W1910229842
FOHQ01000002
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
245995
246069
+
His
GTG
[ENA]
¡û
>W1910575260
JRHO01000009
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
326577
326651
+
His
GTG
[ENA]
¡û
Identical group No.720584 (2 seq.)
>At1344
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
1231940
1232011
+
His
GTG
[Ensembl]
¡û
>W1610000220
AAOR01000002
Euryarchaeota
Methanothrix thermoacetophila PT [AAOR]
120634
120563
-
His
GTG
[ENA]
¡û
Identical group No.720693 (1 seq.)
>A171004727
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
1429973
1430047
+
His
GTG
-
¡û
Identical group No.739577 (2 seq.)
>A171007254
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
1391950
1391878
-
His
GTG
-
¡û
>W1610003251
AFNT02000002
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
30137
30209
+
Pseudo
GTG
[ENA]
¡û
Identical group No.745154 (1 seq.)
>A171001645
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
192892
192820
-
His
GTG
-
¡û
Identical group No.756850 (1 seq.)
>A171003678
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
822774
822702
-
His
GTG
-
¡û
Identical group No.771505 (1 seq.)
>A171002125
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
647043
646971
-
His
GTG
-
¡û
Identical group No.775776 (1 seq.)
>A171002758
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2661437
2661363
-
His
GTG
-
¡û
Identical group No.775781 (1 seq.)
>A171005201
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
1451164
1451236
+
His
GTG
-
¡û
Identical group No.809718 (1 seq.)
>A173000355
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
2243059
2242987
-
Pseudo
GTG
-
¡û
Identical group No.816096 (1 seq.)
>A171006855
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1861121
1861192
+
His
GTG
-
¡û
Identical group No.828334 (1 seq.)
>C151003917
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2665443
2665514
+
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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