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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TTC
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238532 (1 seq.)
>A172000050
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2241849
2241772
-
Glu
TTC
-
¡û
Identical group No.241140 (3 seq.)
>A171000790
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1976449
1976375
-
Glu
TTC
-
¡û
>W1610000798
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1750267
1750341
+
Glu
TTC
[ENA]
¡û
>W1610018998
AQZY01000021
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
225250
225324
+
Glu
TTC
[ENA]
¡û
Identical group No.241216 (16 seq.)
>A171000262
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
962301
962375
+
Glu
TTC
-
¡û
>A171000286
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
565059
564984
-
Glu
TTC
-
¡û
>A171002497
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
328206
328281
+
Glu
TTC
-
¡û
>A171002507
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1686727
1686653
-
Glu
TTC
-
¡û
>At1058
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1700176
1700250
+
Glu
TTC
[Ensembl]
¡û
>At1070
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1283066
1282992
-
Glu
TTC
[Ensembl]
¡û
>At1098
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1300584
1300658
+
Glu
TTC
[Ensembl]
¡û
>At1110
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
893899
893825
-
Glu
TTC
[Ensembl]
¡û
>At1129
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
335592
335666
+
Glu
TTC
[Ensembl]
¡û
>At1152
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1601174
1601100
-
Glu
TTC
[Ensembl]
¡û
>W1610000329
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
74098
74023
-
Glu
TTC
[ENA]
¡û
>W1610000341
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
206235
206161
-
Glu
TTC
[ENA]
¡û
>W1610000450
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
94811
94885
+
Glu
TTC
[ENA]
¡û
>W1610000479
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
473227
473152
-
Glu
TTC
[ENA]
¡û
>W1610000557
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
63810
63884
+
Glu
TTC
[ENA]
¡û
>W1610000580
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1411685
1411610
-
Glu
TTC
[ENA]
¡û
Identical group No.244723 (23 seq.)
>A171000814
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
1192424
1192499
+
Glu
TTC
-
¡û
>W1910193532
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
225284
225358
+
Glu
TTC
[ENA]
¡û
>W1910227022
FNHL01000002
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
145667
145593
-
Glu
TTC
[ENA]
¡û
>W1910227037
FNIA01000003
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
83981
84055
+
Glu
TTC
[ENA]
¡û
>W1910227084
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
999611
999685
+
Glu
TTC
[ENA]
¡û
>W1910229765
FODV01000004
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
343245
343319
+
Glu
TTC
[ENA]
¡û
>W1910230374
FOOQ01000002
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
94173
94099
-
Glu
TTC
[ENA]
¡û
>W1910230719
FOYS01000004
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
155511
155437
-
Glu
TTC
[ENA]
¡û
>W1910230766
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
153695
153621
-
Glu
TTC
[ENA]
¡û
>W1910568571
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
103891
103817
-
Glu
TTC
[ENA]
¡û
>W1910573473
JPES01000003
Euryarchaeota
Haloferax sp. ATB1 [JPES]
14047
13972
-
Glu
TTC
[ENA]
¡û
>W1911629991
PSYW01000002
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
103249
103174
-
Glu
TTC
[ENA]
¡û
>W1911682234
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
948313
948239
-
Glu
TTC
[ENA]
¡û
>W1911717794
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
842360
842286
-
Glu
TTC
[ENA]
¡û
>W1911717828
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
2888397
2888471
+
Glu
TTC
[ENA]
¡û
>W1610000758
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
2399604
2399679
+
Glu
TTC
[ENA]
¡û
>W1610011756
AOHT01000010
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
199140
199215
+
Glu
TTC
[ENA]
¡û
>W1610013722
AOLI01000019
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
695899
695973
+
Glu
TTC
[ENA]
¡û
>W1610013836
AOLK01000021
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
113889
113814
-
Glu
TTC
[ENA]
¡û
>W1610013900
AOLL01000032
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
203614
203688
+
Glu
TTC
[ENA]
¡û
>W1610799816
LOPU01000030
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
121641
121566
-
Glu
TTC
[ENA]
¡û
>W1610799848
LOPV01000174
Euryarchaeota
Haloferax profundi SB29 [LOPV]
23876
23951
+
Glu
TTC
[ENA]
¡û
>W1610799911
LOPW01000066
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
95653
95578
-
Glu
TTC
[ENA]
¡û
Identical group No.245386 (1 seq.)
>At0661
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
1451410
1451484
+
Glu
TTC
[Ensembl]
¡û
Identical group No.247807 (2 seq.)
>A173000070
CP002565
Euryarchaeota
Methanothrix soehngenii GP6 [CP002565]
981080
981004
-
Glu
TTC
-
¡û
>W1630018554
LUYH01000256
Euryarchaeota
Methanosarcinales archaeon Methan_04 [LUYH]
579
503
-
Glu
TTC
[ENA]
¡û
Identical group No.248075 (4 seq.)
>A171004412
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1527330
1527255
-
Glu
TTC
-
¡û
>A171006170
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1527533
1527458
-
Glu
TTC
-
¡û
>A171006685
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
581735
581810
+
Glu
TTC
-
¡û
>A171006727
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
573235
573310
+
Glu
TTC
-
¡û
Identical group No.250423 (12 seq.)
>A171001468
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
802596
802521
-
Glu
TTC
-
¡û
>A171002776
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
253645
253569
-
Glu
TTC
-
¡û
>A171006802
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1903501
1903576
+
Glu
TTC
-
¡û
>W1910228312
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
287077
287152
+
Glu
TTC
[ENA]
¡û
>W1910471789
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
191330
191407
+
Glu
TTC
[ENA]
¡û
>W1910582957
JWTK01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
191254
191331
+
Glu
TTC
[ENA]
¡û
>W1910672554
MCNQ01000010
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
91092
91169
+
Glu
TTC
[ENA]
¡û
>W1911492112
OBDR01000001
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
124241
124318
+
Glu
TTC
[ENA]
¡û
>W1911633750
PVBU01000001
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
234274
234197
-
Glu
TTC
[ENA]
¡û
>W1911653192
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
175896
175973
+
Glu
TTC
[ENA]
¡û
>W1610919855
LSRU01000013
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
22067
22143
+
Glu
TTC
[ENA]
¡û
>W1611052497
MAFX01000015
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
908
831
-
Glu
TTC
[ENA]
¡û
Identical group No.250768 (2 seq.)
>A171001208
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
670645
670720
+
Glu
TTC
-
¡û
>W1610001607
ACYZ01000013
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
38907
38982
+
Glu
TTC
[ENA]
¡û
Identical group No.250789 (5 seq.)
>A171003567
CP004050
Euryarchaeota
Methanobrevibacter sp. AbM4 [CP004050]
1851435
1851359
-
Glu
TTC
-
¡û
>W1910569105
JHWX01000006
Euryarchaeota
Methanobrevibacter wolinii SH [JHWX]
4732
4808
+
Glu
TTC
[ENA]
¡û
>W1910569114
JHWX01000012
Euryarchaeota
Methanobrevibacter wolinii SH [JHWX]
55874
55799
-
Glu
TTC
[ENA]
¡û
>W1910793161
MRCT01000102
Euryarchaeota
Methanobrevibacter sp. 87.7 [MRCT]
1616
1692
+
Glu
TTC
[ENA]
¡û
>W1610040623
BAGX02000020
Euryarchaeota
Methanobrevibacter boviskoreani JH1 [BAGX]
154799
154723
-
Glu
TTC
[ENA]
¡û
Identical group No.250823 (1 seq.)
>A171003734
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2849877
2849951
+
Glu
TTC
-
¡û
Identical group No.251207 (2 seq.)
>At0989
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
157872
157795
-
Glu
TTC
[Ensembl]
¡û
>W1610000133
AADH02000007
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
39448
39525
+
Glu
TTC
[ENA]
¡û
Identical group No.252657 (4 seq.)
>At1173
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1376273
1376347
+
Glu
TTC
[Ensembl]
¡û
>At1186
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
975373
975299
-
Glu
TTC
[Ensembl]
¡û
>W1610000353
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
711944
711868
-
Glu
TTC
[ENA]
¡û
>W1610000364
AAWX01000002
Euryarchaeota
Methanococcus vannielii SB [AAWX]
126852
126927
+
Glu
TTC
[ENA]
¡û
Identical group No.252710 (2 seq.)
>A171002050
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
299814
299738
-
Glu
TTC
-
¡û
>W1910575096
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2145300
2145376
+
Glu
TTC
[ENA]
¡û
Identical group No.256403 (2 seq.)
>At1335
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
705107
705181
+
Glu
TTC
[Ensembl]
¡û
>W1610000231
AAOR01000007
Euryarchaeota
Methanothrix thermoacetophila PT [AAOR]
236
310
+
Glu
TTC
[ENA]
¡û
Identical group No.256467 (1 seq.)
>A171006404
CP012986
Euryarchaeota
Nanohaloarchaea archaeon SG9 [CP012986]
1096583
1096659
+
Glu
TTC
-
¡û
Identical group No.256499 (1 seq.)
>A171001804
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
1003539
1003615
+
Glu
TTC
-
¡û
Identical group No.258376 (1 seq.)
>At1305
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
1413744
1413873
+
Glu
TTC
[Ensembl]
¡û
Identical group No.258380 (1 seq.)
>At1309
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
1659600
1659729
+
Glu
TTC
[Ensembl]
¡û
Identical group No.259889 (1 seq.)
>A178000696
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2998662
2998772
+
Glu
TTC
-
¡û
Identical group No.261120 (1 seq.)
>A171000047
AP011532
Euryarchaeota
Methanocella paludicola SANAE [AP011532]
422405
422480
+
Glu
TTC
-
¡û
Identical group No.261596 (1 seq.)
>At1878
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
539375
539452
+
Glu
TTC
[Ensembl]
¡û
Identical group No.262341 (2 seq.)
>A171002228
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
927681
927604
-
Glu
TTC
-
¡û
>W1610004280
AGJL01000002
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
70549
70627
+
Glu
TTC
[ENA]
¡û
Identical group No.262367 (1 seq.)
>A171001623
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
1911615
1911538
-
Glu
TTC
-
¡û
Identical group No.265357 (2 seq.)
>A171000415
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
673701
673627
-
Glu
TTC
-
¡û
>W1610000986
ABZB01000001
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
250969
250895
-
Glu
TTC
[ENA]
¡û
Identical group No.526116 (2 seq.)
>A171001754
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
1014676
1014748
+
Glu
TTC
-
¡û
>W1610029780
AXDV01000031
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
4519
4592
+
Glu
TTC
[ENA]
¡û
Identical group No.551675 (1 seq.)
>A171002911
CP003243
Euryarchaeota
Methanocella conradii HZ254 [CP003243]
2117355
2117427
+
Glu
TTC
-
¡û
Identical group No.647522 (1 seq.)
>A171000964
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
361676
361603
-
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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