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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154101 (21 seq.)
>A171003049
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2095381
2095464
+
Leu
CAA
-
¡û
>A171003157
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
828278
828361
+
Leu
CAA
-
¡û
>PL191000881
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
569652
569735
+
Leu
CAA
[ENA]
¡û
>W1910226682
FMZP01000004
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
23920
24003
+
Leu
CAA
[ENA]
¡û
>W1910229795
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
617760
617677
-
Leu
CAA
[ENA]
¡û
>W1910229894
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
253003
252920
-
Leu
CAA
[ENA]
¡û
>W1910568524
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1638093
1638176
+
Leu
CAA
[ENA]
¡û
>W1910569076
JHUT02000006
Euryarchaeota
Natrinema mahii H13 [JHUT]
57566
57481
-
Leu
CAA
[ENA]
¡û
>W1910572733
JNCS01000014
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
62267
62184
-
Leu
CAA
[ENA]
¡û
>W1910583003
JXAN01000009
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
20137
20220
+
Leu
CAA
[ENA]
¡û
>W1910646113
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1603492
1603577
+
Leu
CAA
[ENA]
¡û
>W1911434009
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
941841
941758
-
Leu
CAA
[ENA]
¡û
>W1911572223
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
3863502
3863585
+
Leu
CAA
[ENA]
¡û
>W1610004139
AGIN01000011
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
104424
104341
-
Leu
CAA
[ENA]
¡û
>W1610005369
AJVG01000005
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
115532
115615
+
Leu
CAA
[ENA]
¡û
>W1610012231
AOID01000053
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
18657
18740
+
Leu
CAA
[ENA]
¡û
>W1610012245
AOIE01000034
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
100690
100607
-
Leu
CAA
[ENA]
¡û
>W1610012317
AOII01000092
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
5321
5404
+
Leu
CAA
[ENA]
¡û
>W1610012323
AOIJ01000030
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
118718
118801
+
Leu
CAA
[ENA]
¡û
>W1610012393
AOIK01000029
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
167921
168004
+
Leu
CAA
[ENA]
¡û
>W1610012698
AOIR01000062
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
21341
21424
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK