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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241107 (9 seq.)
>A171002444
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
96087
96161
+
Val
CAC
-
¡û
>A171003044
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1569487
1569562
+
Val
CAC
-
¡û
>PL191000876
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
298556
298630
+
Val
CAC
[ENA]
¡û
>W1910568519
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1366962
1367036
+
Val
CAC
[ENA]
¡û
>W1910569053
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
146304
146229
-
Val
CAC
[ENA]
¡û
>W1910646112
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1336901
1336975
+
Val
CAC
[ENA]
¡û
>W1610004140
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
13926
14003
+
Val
CAC
[ENA]
¡û
>W1610012233
AOIE01000001
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
1095
1018
-
Val
CAC
[ENA]
¡û
>W1610012693
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
131544
131621
+
Val
CAC
[ENA]
¡û
Identical group No.241130 (70 seq.)
>A171001131
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2385080
2385155
+
Val
CAC
-
¡û
>A171001324
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
382459
382385
-
Val
CAC
-
¡û
>A171003489
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2734377
2734303
-
Val
CAC
-
¡û
>A171004150
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2027144
2027069
-
Val
CAC
-
¡û
>A171006935
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2293790
2293715
-
Val
CAC
-
¡û
>A171006959
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1419201
1419275
+
Val
CAC
-
¡û
>A171007010
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
3523339
3523264
-
Val
CAC
-
¡û
>WENV170679667
LFCJ01000111
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
29
103
+
Val
CAC
[ENA]
¢þ
>WENV170679789
LFCJ01000479
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
292
218
-
Val
CAC
[ENA]
¢þ
>WENV170679816
LFCJ01000635
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3523
3448
-
Val
CAC
[ENA]
¢þ
>WENV170679869
LFCJ01001107
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
10016
10090
+
Val
CAC
[ENA]
¢þ
>WENV170679876
LFCJ01001198
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
17711
17634
-
Val
CAC
[ENA]
¢þ
>WENV170680066
LFCJ01003414
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Val
CAC
[ENA]
¢þ
>WENV170680209
LFCJ01005926
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
76
2
-
Val
CAC
[ENA]
¢þ
>WENV170680252
LFCJ01006783
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7953
8028
+
Val
CAC
[ENA]
¢þ
>WENV170680389
LFCJ01010239
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
16
90
+
Val
CAC
[ENA]
¢þ
>WENV170680466
LFCJ01011891
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5882
5956
+
Val
CAC
[ENA]
¢þ
>WENV170681364
LFFM01000596
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
17729
17803
+
Val
CAC
[ENA]
¢þ
>WENV170681451
LFFM01000942
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20604
20678
+
Val
CAC
[ENA]
¢þ
>WENV170681695
LFFM01002091
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4470
4544
+
Val
CAC
[ENA]
¢þ
>WENV170681963
LFFM01004324
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
333
407
+
Val
CAC
[ENA]
¢þ
>WENV170702920
LKMJ01004852
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4684
4610
-
Val
CAC
[ENA]
¢þ
>WENV170703018
LKMJ01005633
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3568
3642
+
Val
CAC
[ENA]
¢þ
>WENV170703108
LKMJ01006677
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
107
181
+
Val
CAC
[ENA]
¢þ
>WENV170703246
LKMJ01008443
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1096
1022
-
Val
CAC
[ENA]
¢þ
>WENV170703310
LKMJ01009280
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9124
9198
+
Val
CAC
[ENA]
¢þ
>WENV170703382
LKMJ01010512
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8450
8376
-
Val
CAC
[ENA]
¢þ
>WENV170703392
LKMJ01010779
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7904
7830
-
Val
CAC
[ENA]
¢þ
>WENV170704004
LKMJ01020555
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4692
4618
-
Val
CAC
[ENA]
¢þ
>PL191000890
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
202928
202854
-
Val
CAC
[ENA]
¡û
>W1910226683
FMZP01000004
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
132673
132598
-
Val
CAC
[ENA]
¡û
>W1910227139
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
774840
774914
+
Val
CAC
[ENA]
¡û
>W1910229321
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
376933
377007
+
Val
CAC
[ENA]
¡û
>W1910229790
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
545036
545110
+
Val
CAC
[ENA]
¡û
>W1910229891
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
144250
144325
+
Val
CAC
[ENA]
¡û
>W1910229925
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
750795
750720
-
Val
CAC
[ENA]
¡û
>W1910230256
FOKW01000009
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
69288
69214
-
Val
CAC
[ENA]
¡û
>W1910230829
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
876018
876093
+
Val
CAC
[ENA]
¡û
>W1910340510
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
362089
362163
+
Val
CAC
[ENA]
¡û
>W1910340550
FTNR01000008
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
62849
62774
-
Val
CAC
[ENA]
¡û
>W1910572550
JMIP02000013
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
191842
191916
+
Val
CAC
[ENA]
¡û
>W1910575872
JROF01000005
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
42759
42684
-
Val
CAC
[ENA]
¡û
>W1910657551
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
154235
154160
-
Val
CAC
[ENA]
¡û
>W1911434008
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1025680
1025605
-
Val
CAC
[ENA]
¡û
>W1610001053
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
366960
367034
+
Val
CAC
[ENA]
¡û
>W1610004056
AGFZ01000064
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
81610
81533
-
Val
CAC
[ENA]
¡û
>W1610011706
AOHS01000009
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
151852
151778
-
Val
CAC
[ENA]
¡û
>W1610011900
AOHW01000007
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
63944
64018
+
Val
CAC
[ENA]
¡û
>W1610011930
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
84745
84819
+
Val
CAC
[ENA]
¡û
>W1610012013
AOHY01000057
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
22988
23062
+
Val
CAC
[ENA]
¡û
>W1610012028
AOHZ01000040
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
3529
3452
-
Val
CAC
[ENA]
¡û
>W1610012089
AOIA01000123
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
15318
15243
-
Val
CAC
[ENA]
¡û
>W1610012138
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
117587
117510
-
Val
CAC
[ENA]
¡û
>W1610012415
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
100960
101037
+
Val
CAC
[ENA]
¡û
>W1610012462
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
81455
81378
-
Val
CAC
[ENA]
¡û
>W1610012525
AOIN01000067
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
131872
131798
-
Val
CAC
[ENA]
¡û
>W1610012548
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
38125
38050
-
Val
CAC
[ENA]
¡û
>W1610012607
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
318750
318825
+
Val
CAC
[ENA]
¡û
>W1610012734
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
299323
299249
-
Val
CAC
[ENA]
¡û
>W1610012786
AOIT01000038
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
53954
54031
+
Val
CAC
[ENA]
¡û
>W1610014444
AOLZ01000076
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
35490
35413
-
Val
CAC
[ENA]
¡û
>W1610014460
AOMA01000063
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
98840
98765
-
Val
CAC
[ENA]
¡û
>W1610019038
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
630104
630030
-
Val
CAC
[ENA]
¡û
>W1610083022
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
602314
602388
+
Val
CAC
[ENA]
¡û
>W1610671381
LKCV01000131
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
5283
5206
-
Val
CAC
[ENA]
¡û
>W1610682147
LKMK01000191
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
16
90
+
Val
CAC
[ENA]
¡û
>W1610682198
LKMM01000086
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
76
2
-
Val
CAC
[ENA]
¡û
>W1610682542
LKNC01000047
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
4470
4544
+
Val
CAC
[ENA]
¡û
>W1610682582
LKND01000066
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
20604
20678
+
Val
CAC
[ENA]
¡û
>W1610682648
LKNG01000011
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
17729
17803
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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