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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = CAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87281 (64 seq.)
>A171001144
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2620254
2620170
-
Leu
CAG
-
¡û
>A171001289
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
416960
417044
+
Leu
CAG
-
¡û
>A171002484
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
55431
55347
-
Leu
CAG
-
¡û
>A171002722
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1790353
1790269
-
Leu
CAG
-
¡û
>A171003046
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1646041
1646125
+
Leu
CAG
-
¡û
>A171003159
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
980874
980958
+
Leu
CAG
-
¡û
>A171003496
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1752065
1751981
-
Leu
CAG
-
¡û
>A171004139
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1679543
1679627
+
Leu
CAG
-
¡û
>A171006961
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1542829
1542913
+
Leu
CAG
-
¡û
>WENV170702402
LKMJ01001739
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11189
11273
+
Leu
CAG
[ENA]
¢þ
>PL191000878
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
374343
374427
+
Leu
CAG
[ENA]
¡û
>W1910226685
FMZP01000004
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
61293
61209
-
Leu
CAG
[ENA]
¡û
>W1910226905
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
1004254
1004170
-
Leu
CAG
[ENA]
¡û
>W1910229323
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
538973
539057
+
Leu
CAG
[ENA]
¡û
>W1910229792
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
844599
844515
-
Leu
CAG
[ENA]
¡û
>W1910229893
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
215630
215714
+
Leu
CAG
[ENA]
¡û
>W1910229927
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
617574
617490
-
Leu
CAG
[ENA]
¡û
>W1910230254
FOKW01000009
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
113751
113835
+
Leu
CAG
[ENA]
¡û
>W1910230833
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1283569
1283485
-
Leu
CAG
[ENA]
¡û
>W1910340512
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
485717
485801
+
Leu
CAG
[ENA]
¡û
>W1910340528
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
149136
149220
+
Leu
CAG
[ENA]
¡û
>W1910568521
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1442756
1442840
+
Leu
CAG
[ENA]
¡û
>W1910569055
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
70745
70661
-
Leu
CAG
[ENA]
¡û
>W1910572565
JMIP02000015
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
204044
204128
+
Leu
CAG
[ENA]
¡û
>W1910572723
JNCS01000008
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
116738
116654
-
Leu
CAG
[ENA]
¡û
>W1910575875
JROF01000009
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
73265
73349
+
Leu
CAG
[ENA]
¡û
>W1910646142
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1480156
1480072
-
Leu
CAG
[ENA]
¡û
>W1910657547
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
191734
191818
+
Leu
CAG
[ENA]
¡û
>W1910826094
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
229144
229229
+
Leu
CAG
[ENA]
¡û
>W1911434000
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2219396
2219312
-
Leu
CAG
[ENA]
¡û
>W1911693745
QLVG01000035
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
13465
13380
-
Leu
CAG
[ENA]
¡û
>W1911696833
QNGA01000004
Euryarchaeota
halophilic archaeon H22 [QNGA]
276258
276173
-
Leu
CAG
[ENA]
¡û
>W1911709870
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
792693
792608
-
Leu
CAG
[ENA]
¡û
>W1911709958
QPND01000001
Euryarchaeota
Saliphagus sp. LR7 [QPND]
286490
286574
+
Leu
CAG
[ENA]
¡û
>W1911717974
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
37083
37167
+
Leu
CAG
[ENA]
¡û
>W1610001058
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
332458
332371
-
Leu
CAG
[ENA]
¡û
>W1610003597
AGCX01000202
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
2645
2730
+
Leu
CAG
[ENA]
¡û
>W1610004142
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
90480
90564
+
Leu
CAG
[ENA]
¡û
>W1610005389
AJVG01000027
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
10024
10111
+
Leu
CAG
[ENA]
¡û
>W1610011708
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
22806
22893
+
Leu
CAG
[ENA]
¡û
>W1610011932
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
139693
139777
+
Leu
CAG
[ENA]
¡û
>W1610011975
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
53618
53534
-
Leu
CAG
[ENA]
¡û
>W1610012057
AOHZ01000094
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
20975
20891
-
Leu
CAG
[ENA]
¡û
>W1610012088
AOIA01000122
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
2824
2740
-
Leu
CAG
[ENA]
¡û
>W1610012140
AOIB01000031
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
46728
46644
-
Leu
CAG
[ENA]
¡û
>W1610012228
AOID01000051
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
41925
42012
+
Leu
CAG
[ENA]
¡û
>W1610012258
AOIE01000079
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
49579
49663
+
Leu
CAG
[ENA]
¡û
>W1610012294
AOII01000037
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
51929
51842
-
Leu
CAG
[ENA]
¡û
>W1610012326
AOIJ01000032
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
77699
77786
+
Leu
CAG
[ENA]
¡û
>W1610012392
AOIK01000028
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
22672
22585
-
Leu
CAG
[ENA]
¡û
>W1610012417
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
117763
117850
+
Leu
CAG
[ENA]
¡û
>W1610012458
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
116886
116973
+
Leu
CAG
[ENA]
¡û
>W1610012523
AOIN01000065
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
19441
19354
-
Leu
CAG
[ENA]
¡û
>W1610012550
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
21485
21398
-
Leu
CAG
[ENA]
¡û
>W1610012609
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
340075
340162
+
Leu
CAG
[ENA]
¡û
>W1610012660
AOIQ01000024
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
18132
18219
+
Leu
CAG
[ENA]
¡û
>W1610012695
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
210055
210139
+
Leu
CAG
[ENA]
¡û
>W1610012730
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
62362
62446
+
Leu
CAG
[ENA]
¡û
>W1610012788
AOIT01000039
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
11281
11368
+
Leu
CAG
[ENA]
¡û
>W1610014459
AOMA01000063
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
143590
143677
+
Leu
CAG
[ENA]
¡û
>W1610046869
BBCV01000070
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
6329
6244
-
Leu
CAG
[ENA]
¡û
>W1610083031
CBMB010000004
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
202728
202641
-
Leu
CAG
[ENA]
¡û
>W1610671360
LKCV01000007
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
21775
21691
-
Leu
CAG
[ENA]
¡û
>W1610671383
LKCV01000133
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
2672
2759
+
Leu
CAG
[ENA]
¡û
Identical group No.178057 (1 seq.)
>PL191001463
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
24725
24643
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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