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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = CTC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241111 (28 seq.)
>A171001290
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
458937
459011
+
Glu
CTC
-
¡û
>A171003047
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1685246
1685320
+
Glu
CTC
-
¡û
>A171003497
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1721029
1720954
-
Glu
CTC
-
¡û
>A171003733
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2641522
2641596
+
Glu
CTC
-
¡û
>A171004140
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1700898
1700973
+
Glu
CTC
-
¡û
>A171006869
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2817706
2817632
-
Glu
CTC
-
¡û
>A171007029
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
139996
139921
-
Glu
CTC
-
¡û
>PL191000879
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
415362
415436
+
Glu
CTC
[ENA]
¡û
>W1910226712
FMZP01000043
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
9069
9143
+
Glu
CTC
[ENA]
¡û
>W1910226719
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
100172
100098
-
Glu
CTC
[ENA]
¡û
>W1910229714
FOCX01000027
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
1913
1839
-
Glu
CTC
[ENA]
¡û
>W1910229793
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
807131
807056
-
Glu
CTC
[ENA]
¡û
>W1910229897
FOIC01000005
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
232418
232492
+
Glu
CTC
[ENA]
¡û
>W1910568522
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1483778
1483852
+
Glu
CTC
[ENA]
¡û
>W1910572569
JMIP02000017
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
367549
367474
-
Glu
CTC
[ENA]
¡û
>W1910646143
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1443365
1443291
-
Glu
CTC
[ENA]
¡û
>W1910657548
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
233612
233686
+
Glu
CTC
[ENA]
¡û
>W1911434001
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2186864
2186790
-
Glu
CTC
[ENA]
¡û
>W1610001059
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
290481
290407
-
Glu
CTC
[ENA]
¡û
>W1610004143
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
129685
129759
+
Glu
CTC
[ENA]
¡û
>W1610011709
AOHS01000010
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
64948
65022
+
Glu
CTC
[ENA]
¡û
>W1610012086
AOIA01000121
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
13417
13342
-
Glu
CTC
[ENA]
¡û
>W1610012259
AOIE01000080
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
36366
36440
+
Glu
CTC
[ENA]
¡û
>W1610012518
AOIN01000064
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
109732
109657
-
Glu
CTC
[ENA]
¡û
>W1610012696
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
248453
248527
+
Glu
CTC
[ENA]
¡û
>W1610012783
AOIT01000035
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
112623
112697
+
Glu
CTC
[ENA]
¡û
>W1610675782
LKIR01000119
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
56519
56444
-
Glu
CTC
[ENA]
¡û
>W1610675783
LKIR01000119
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
56277
56203
-
Glu
CTC
[ENA]
¡û
Identical group No.241198 (8 seq.)
>PL171001789
LN831305
Euryarchaeota
Halobacterium hubeiense JI20-1 plasmid:pSTJ003
39014
38936
-
Glu
CTC
[ENA]
¡û
>W1610085097
CEML01000005
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
80626
80704
+
Glu
CTC
[ENA]
¡û
>W1610085136
CEMN01000003
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
124712
124790
+
Glu
CTC
[ENA]
¡û
>W1610085175
CEMO01000004
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
40285
40207
-
Glu
CTC
[ENA]
¡û
>W1610085214
CEMP01000004
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
124725
124803
+
Glu
CTC
[ENA]
¡û
>W1610085255
CEMQ01000004
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
80621
80699
+
Glu
CTC
[ENA]
¡û
>W1610085296
CEMR01000005
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
124768
124846
+
Glu
CTC
[ENA]
¡û
>W1610085337
CEMZ01000004
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
125430
125508
+
Glu
CTC
[ENA]
¡û
Identical group No.241301 (3 seq.)
>PL171000209
AY596295
Euryarchaeota
Haloarcula marismortui ATCC 43049 plasmid:pNG600
50860
50782
-
Pseudo
CTC
[ENA]
¡û
>PL191001356
CP039134
Euryarchaeota
Haloarcula marismortui ATCC 43049 plasmid:pHMA155 (CP039134)
57356
57278
-
Glu
CTC
[ENA]
¡û
>W1610014402
AOLY01000042
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
98360
98438
+
Pseudo
CTC
[ENA]
¡û
Identical group No.244046 (2 seq.)
>PL191000507
CP026311
Euryarchaeota
Salinigranum rubrum GX10 plasmid:unnamed2 (CP026311)
89066
89144
+
Glu
CTC
[ENA]
¡û
>W1911655766
QEQJ01000007
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
106838
106916
+
Glu
CTC
[ENA]
¡û
Identical group No.455579 (19 seq.)
>WENV180318936
OBKM01051653
[OBKM] metagenome; water
74
2
-
Glu
CTC
[ENA]
¢þ
>WENV170680225
LFCJ01006241
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8216
8144
-
Glu
CTC
[ENA]
¢þ
>WENV170680452
LFCJ01011674
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1350
1424
+
Glu
CTC
[ENA]
¢þ
>PL191000840
CP031152
Euryarchaeota
Haloplanus sp. CBA1113 plasmid:pCBA1113-02 (CP031152)
9306
9378
+
Glu
CTC
[ENA]
¡û
>W1910006720
BBJO01000043
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
9564
9492
-
Glu
CTC
[ENA]
¡û
>W1910006763
BBJP01000025
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
12785
12857
+
Glu
CTC
[ENA]
¡û
>W1910226893
FNFC01000035
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
5698
5770
+
Glu
CTC
[ENA]
¡û
>W1910228492
FNPC01000012
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
57263
57335
+
Glu
CTC
[ENA]
¡û
>W1910230272
FOKW01000014
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
16599
16527
-
Glu
CTC
[ENA]
¡û
>W1910575017
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
182171
182243
+
Glu
CTC
[ENA]
¡û
>W1910880449
NEDJ01000026
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
5466
5394
-
Glu
CTC
[ENA]
¡û
>W1910891384
NEWJ01000007
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
35352
35426
+
Glu
CTC
[ENA]
¡û
>W1910911957
NHOV01000832
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
14342
14414
+
Glu
CTC
[ENA]
¡û
>W1910911991
NHOW01000026
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
14341
14413
+
Glu
CTC
[ENA]
¡û
>W1910912525
NHPJ01000114
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
65632
65560
-
Glu
CTC
[ENA]
¡û
>W1911709759
QPLT01000127
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
434
360
-
Glu
CTC
[ENA]
¡û
>W1610014238
AOLS01000072
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
10547
10619
+
Glu
CTC
[ENA]
¡û
>W1610024324
ATXS01000007
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
160857
160929
+
Glu
CTC
[ENA]
¡û
>W1610024390
ATYM01000003
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
402864
402936
+
Glu
CTC
[ENA]
¡û
Identical group No.638988 (1 seq.)
>PL191001465
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
24401
24329
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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