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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52651 (6 seq.)
>WENV180318863
OBKM01020878
[OBKM] metagenome; water
331
420
+
Ser
GCT
[ENA]
¢þ
>PL191001462
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
25434
25345
-
Ser
GCT
[ENA]
¡û
>W1910006717
BBJO01000043
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
10602
10513
-
Ser
GCT
[ENA]
¡û
>W1910228489
FNPC01000012
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
56230
56319
+
Ser
GCT
[ENA]
¡û
>W1910230269
FOKW01000014
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
19021
18932
-
Ser
GCT
[ENA]
¡û
>W1910575014
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
181138
181227
+
Ser
GCT
[ENA]
¡û
Identical group No.61356 (3 seq.)
>PL191000839
CP031152
Euryarchaeota
Haloplanus sp. CBA1113 plasmid:pCBA1113-02 (CP031152)
9027
9116
+
Ser
GCT
[ENA]
¡û
>W1910226892
FNFC01000035
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
5419
5508
+
Ser
GCT
[ENA]
¡û
>W1910912524
NHPJ01000114
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
65911
65822
-
Ser
GCT
[ENA]
¡û
Identical group No.154102 (39 seq.)
>A171001143
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2622759
2622674
-
Ser
GCT
-
¡û
>A171003045
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1643561
1643646
+
Ser
GCT
-
¡û
>A171003158
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
978400
978485
+
Ser
GCT
-
¡û
>WENV170680204
LFCJ01005880
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3005
3090
+
Ser
GCT
[ENA]
¢þ
>WENV170680368
LFCJ01009699
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6420
6505
+
Ser
GCT
[ENA]
¢þ
>WENV170681378
LFFM01000650
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
361
276
-
Ser
GCT
[ENA]
¢þ
>WENV170681547
LFFM01001334
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11081
11166
+
Ser
GCT
[ENA]
¢þ
>WENV170702841
LKMJ01004372
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7809
7894
+
Ser
GCT
[ENA]
¢þ
>WENV170702987
LKMJ01005300
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
574
659
+
Ser
GCT
[ENA]
¢þ
>WENV170704107
LKMJ01022689
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4785
4700
-
Ser
GCT
[ENA]
¢þ
>PL191000877
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
371866
371951
+
Ser
GCT
[ENA]
¡û
>W1910006888
BBMO01000002
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
66962
66879
-
Ser
GCT
[ENA]
¡û
>W1910226684
FMZP01000004
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
63765
63680
-
Ser
GCT
[ENA]
¡û
>W1910226904
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
1006761
1006676
-
Ser
GCT
[ENA]
¡û
>W1910229791
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
847070
846985
-
Ser
GCT
[ENA]
¡û
>W1910229892
FOIC01000004
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
213158
213243
+
Ser
GCT
[ENA]
¡û
>W1910340527
FTNR01000001
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
146658
146743
+
Ser
GCT
[ENA]
¡û
>W1910568520
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1440279
1440364
+
Ser
GCT
[ENA]
¡û
>W1910569054
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
73218
73133
-
Ser
GCT
[ENA]
¡û
>W1910572722
JNCS01000008
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
119212
119127
-
Ser
GCT
[ENA]
¡û
>W1910583013
JXAN01000044
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
12824
12909
+
Ser
GCT
[ENA]
¡û
>W1910646141
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1482629
1482544
-
Ser
GCT
[ENA]
¡û
>W1911433999
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2221874
2221789
-
Ser
GCT
[ENA]
¡û
>W1610004141
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
88000
88085
+
Ser
GCT
[ENA]
¡û
>W1610005388
AJVG01000027
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
7550
7635
+
Ser
GCT
[ENA]
¡û
>W1610011901
AOHW01000008
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
220
305
+
Ser
GCT
[ENA]
¡û
>W1610011931
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
137218
137303
+
Ser
GCT
[ENA]
¡û
>W1610011974
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
56096
56011
-
Ser
GCT
[ENA]
¡û
>W1610012056
AOHZ01000094
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
23495
23410
-
Ser
GCT
[ENA]
¡û
>W1610012257
AOIE01000079
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
47099
47184
+
Ser
GCT
[ENA]
¡û
>W1610012293
AOII01000037
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
54403
54318
-
Ser
GCT
[ENA]
¡û
>W1610012325
AOIJ01000032
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
75225
75310
+
Ser
GCT
[ENA]
¡û
>W1610012391
AOIK01000028
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
25146
25061
-
Ser
GCT
[ENA]
¡û
>W1610012694
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
207578
207663
+
Ser
GCT
[ENA]
¡û
>W1610012729
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
59857
59942
+
Ser
GCT
[ENA]
¡û
>W1610012787
AOIT01000039
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
8806
8891
+
Ser
GCT
[ENA]
¡û
>W1610019039
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
497992
497907
-
Ser
GCT
[ENA]
¡û
>W1610671359
LKCV01000007
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
24295
24210
-
Ser
GCT
[ENA]
¡û
>W1610682534
LKNC01000018
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
11081
11166
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK