This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81116 (2 seq.)
>PL193000152
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
24982
24896
-
Ser
GGA
[ENA]
¡û
>W1930009833
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
181590
181676
+
Ser
GGA
[ENA]
¡û
Identical group No.132358 (4 seq.)
>PL171000343
CP001870
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 plasmid:pHM300
241679
241595
-
Ser
GGA
[ENA]
¡û
>PL171000651
CP007553
Euryarchaeota
Haloferax mediterranei ATCC 33500 plasmid:HMPLAS2
28717
28801
+
Ser
GGA
[ENA]
¡û
>PL191001358
CP039141
Euryarchaeota
Haloferax mediterranei ATCC 33500 plasmid:pHME322 (CP039141)
146719
146635
-
Ser
GGA
[ENA]
¡û
>W1610014005
AOLO01000001
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
28717
28801
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK