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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.704330 (9 seq.)
>PL191001464
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
24638
24566
-
Tyr
GTA
[ENA]
¡û
>W1910546993
FZNK01000013
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
12456
12528
+
Tyr
GTA
[ENA]
¡û
>W1910575016
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
181934
182006
+
Tyr
GTA
[ENA]
¡û
>W1910873666
NDWV01000022
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
12488
12560
+
Tyr
GTA
[ENA]
¡û
>W1910880448
NEDJ01000026
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
5703
5631
-
Tyr
GTA
[ENA]
¡û
>W1910911683
NHNZ01000066
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
7453
7381
-
Tyr
GTA
[ENA]
¡û
>W1910911956
NHOV01000832
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
14105
14177
+
Tyr
GTA
[ENA]
¡û
>W1910911990
NHOW01000026
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
14104
14176
+
Tyr
GTA
[ENA]
¡û
>W1610024323
ATXS01000007
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
160620
160694
+
Pseudo
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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